| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0563 |
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| Symbol | |
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| ID | 6162655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 612154 |
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| End bp | 613257 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641663312 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_001789603 |
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| Protein GI | 171057254 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4603] ABC-type uncharacterized transport system, permease component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.0808252 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTCG TGCCTTTGCC GCGCTGGGTC GACGTCGGCC TGCTGCCGCT GCTCAACGTG
GGCGTGGCGA TGCTGGCGGC CGGCGTGCTG GTGGCCGCGC TCGGCCACAG CCCTTGGGCG
GCCCTGAAGC TGCTGGCCGA CGGCGCCTTC GGCAGCCCGC TGGCCTGGGG CTACACGCTC
TACTACAGCA CCAACTTCAT CTTCACCGGC CTGGCGGTGG CGGTGGCGGC GCAGGCCGGC
CACTTCAACA TCGGCGGCGA GGGCCAGGCC ACGCTCGGCG GCGTGGGCGT GGCGCTGCTG
CTGCTGGCGC TCGATCCGTA CCTGAGCACC TGGCTGCTGC TGCCGCTGGT GGTGGTCGCC
GGCGCCGCGG CCGGTGCGGC CTGGGCGGCG GTGCCGGCGT GGCTGCAGGC GCGCCGGGGC
AGCCACATCG TCATCACGAC CATCATGTTC AACTTCCTGG CCAGCACGCT GATCGTCTGG
CTGCTGGTCA ACGTGATCAA GGCGCCGGGC ACGCCGTCGG TCGAGACGCG CCTGTTCGCG
CCCGCCGGCC AGCTGCCGAG CGCGCAGCAG CTCGCCACGC TGATGGGCTT TGCGATGCCC
GACACGCCGC TCAACCTGAG CCTGCTGTTC GCGCTGCTCG CGGCATTGGG CGTGTGGCTG
CTGCTGTGGC ACACCCGGCT CGGCTACGCG CTGCGCGCGC TCGGCGATGC GCCCGACGCC
GCGCACTACG CCGGCTTCAA GCCGCAGCGC CTGACCGTGA TCGCGCTGAT GCTGTCGGGC
GCGCTGGCCG GCGGCGTGGG CGTCAACGAG GTCAGCGGCG TGCACCACCG GCTGCTGCTC
GACTTCGTGG CCGGCGCCGG TTTCACCGGC ATCGCGGTGG CGCTGATGGG CCGCAACCAC
CCGGGCGGCA TCGTGCTGGC GGCGCTGCTG TTCGGCGCGC TGGCGCAGGG CGGCTCGGAG
CTGGCGTTCG AGATCCCCGC CTTCACGCGC GACATGGTCA CCGCCGTGCA GGGCCTGGTG
GTGCTGTTCT GCGGCGCGCT GGCGCTGATG CTGCGCCCGC TGCTGCAGCG TATCTGGGGC
TGGCTGGGGC CTCGCCATGG ATGA
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| Protein sequence | MSVVPLPRWV DVGLLPLLNV GVAMLAAGVL VAALGHSPWA ALKLLADGAF GSPLAWGYTL
YYSTNFIFTG LAVAVAAQAG HFNIGGEGQA TLGGVGVALL LLALDPYLST WLLLPLVVVA
GAAAGAAWAA VPAWLQARRG SHIVITTIMF NFLASTLIVW LLVNVIKAPG TPSVETRLFA
PAGQLPSAQQ LATLMGFAMP DTPLNLSLLF ALLAALGVWL LLWHTRLGYA LRALGDAPDA
AHYAGFKPQR LTVIALMLSG ALAGGVGVNE VSGVHHRLLL DFVAGAGFTG IAVALMGRNH
PGGIVLAALL FGALAQGGSE LAFEIPAFTR DMVTAVQGLV VLFCGALALM LRPLLQRIWG
WLGPRHG
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