| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0550 |
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| Symbol | |
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| ID | 6164125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 595435 |
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| End bp | 597159 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641663299 |
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| Product | type IV-A pilus assembly ATPase PilB |
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| Protein accession | YP_001789590 |
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| Protein GI | 171057241 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCGCTG AAACACTGTC CGACGCCCCG CAAAGCACCC TCTCCGGGGT GGCCCGCGTG
CTGGTGCACG CCGGCAAGCT GAACGCCCGC GCGGCCGAAG AACTCGCCCG CCTCGCACGT
GATCAGCGCC GCAACTTCGT CGCCGCCGCG GTCGGCGCCA ATCTGCTGAG TTCGGCCGAT
CTGGCCCACA CGCTGTCGCA CGCGCTGGCC GTGCCGCTGC TCGACCTCGA CGCGGTCGAC
GTCAGCAAGC TGCCGCAGAA CCTGGTCGAC GCGCGCACGC TGTCGCAGTA TCAGGTGCTG
GTGCTGGGCA AACGCGGCAA CCGGCTGTTC ATCGGCGGCG CCGACCCGAC CGACCAGGAA
GCGGTCGACC GCATCAAGTT CGCCACCCAG CTGACGCCCG AGTGGGTGAT CGTCGAATAC
GACAAGCTGG CCAAGATCGT CGAGGCCAAG AGCACCTCGG CGACCGAGGC GCTCGAATCG
ATCGTCGCCG GCGATTTCGA GTTCGACGTC GAAGAGCAGG ATCCGAACGC CAAGCCCGAC
GAGGAGGTCA CCACCGACGT CGAGGACGCG CCGGTGGTGC GCTTCCTGCA GAAGATGCTG
ATCGACGCGA TCAACATGCG GGCGTCGGAC CTGCACTTCG AGCCCTACGA GCAGACCTAC
CGGGTGCGCT TTCGCATCGA CGGCGAGCTG CGCGAGATCA CCCAGCCGCC GGTGGCGATC
AAGGACAAGC TGGCCTCGCG CATCAAGGTC ATCAGCCGCC TGGACATCGC CGAAAAACGC
GTGCCGCAGG ACGGCCGCAT GAAGCTGAAG TTCGGCAACA AGGCAATCGA CTTCCGCATC
AGCACGCTGC CGACGCTGTT CGGCGAGAAG ATCGTGATCC GGATCCTCGA CCCGTCGTCG
GCCAAGCTGG GCGTCGAGGC GCTCGGTTAC GAGCGCGAGG AGAAGGATCG GCTGCTGTCG
GCCATCAAGC GGCCGTACGG GATGATCCTG GTCACCGGCC CGACCGGCTC GGGCAAGACG
GTGTCGCTCT ACACCTGCCT GAACATCCTG AACCAGCCCG GCGTCAACAT CTCGACCGTC
GAGGATCCGG CCGAAATCAA CCTGCCCGGC ATCAACCAGG TCAACGTCAA CGACAAGGCG
GGCATGAACT TCGCCGTCGC GCTGCGCGCC TTCCTGCGCC AGGATCCGGA CGTGATCATG
GTCGGCGAGA TCCGCGACAT CGAGACCGCC GACATCGCGA TCAAGGCCGC CCAGACCGGC
CACCTGGTGC TGTCGACGCT GCACACCAAC GATGCCCCGA CCACGCTGAC GCGGCTGCTC
AACATGGGCG TGCCGCCGTT CAACATCGCC TCGAGCATCA TCCTGATCTC GGCCCAGCGA
CTGTGCCGAC GCCTGTGCGA GAACTGCAAG GCTCCGGCCG AATACCCGCG CGAGGCGCTG
CTGCGCGCCG GCTTCAAGCC CGACGAGGTC GACGGCTCCT GGAAACCCTA CAAGGCGGTC
GGCTGCTCGG CCTGCAACAA CGGCTACCGC GGGCGGGTCG GCGTCTATCA GGTGATGCCG
ATCACCGAGG CGATCCAGCG CGTCATCCTC GCCGAAGGCA CCGCGCTCGA CATCGCCGAG
CAGGCCGCCC GCGACGGCGT GCGCGATCTG CGGCTGTCGG GTCTGGTTAA AGTGCGGGCG
GGCGCCACCA CGCTCGAAGA AGTGATTTCC GTGACCAACC AATGA
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| Protein sequence | MAAETLSDAP QSTLSGVARV LVHAGKLNAR AAEELARLAR DQRRNFVAAA VGANLLSSAD
LAHTLSHALA VPLLDLDAVD VSKLPQNLVD ARTLSQYQVL VLGKRGNRLF IGGADPTDQE
AVDRIKFATQ LTPEWVIVEY DKLAKIVEAK STSATEALES IVAGDFEFDV EEQDPNAKPD
EEVTTDVEDA PVVRFLQKML IDAINMRASD LHFEPYEQTY RVRFRIDGEL REITQPPVAI
KDKLASRIKV ISRLDIAEKR VPQDGRMKLK FGNKAIDFRI STLPTLFGEK IVIRILDPSS
AKLGVEALGY EREEKDRLLS AIKRPYGMIL VTGPTGSGKT VSLYTCLNIL NQPGVNISTV
EDPAEINLPG INQVNVNDKA GMNFAVALRA FLRQDPDVIM VGEIRDIETA DIAIKAAQTG
HLVLSTLHTN DAPTTLTRLL NMGVPPFNIA SSIILISAQR LCRRLCENCK APAEYPREAL
LRAGFKPDEV DGSWKPYKAV GCSACNNGYR GRVGVYQVMP ITEAIQRVIL AEGTALDIAE
QAARDGVRDL RLSGLVKVRA GATTLEEVIS VTNQ
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