Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0509 |
Symbol | |
ID | 6162302 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 551092 |
End bp | 553317 |
Gene Length | 2226 bp |
Protein Length | 741 aa |
Translation table | 11 |
GC content | 76% |
IMG OID | 641663258 |
Product | hypothetical protein |
Protein accession | YP_001789549 |
Protein GI | 171057200 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.0140536 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTCATCA AGATGTGTCG CCCGCTGTGG GCGATGGCCT GCCTGCTGCT CGCCGCCCTG CTGGCCGGGC CCGGTCTGGC CCGGGCCGCG GACGATCCGC CCGGGCGGGT CGGCCGCATC GCCTGGATCG ACGGCGACGC CCGCCTGGCG CGCGGCGACG GCGGCGACAC GCTCGACCAC GCGCGCGATT CGCTGCGCAA CTGGCCGGTG ACCAGCGGCG ACGAACTCAG CGTGGGCAAC AACAGCCGGG CCGAGATCGG CATCGGCTCG ACCCGCCTGC GCCTGGGCGA AAACAGCCAG CTGCTGCTGC GCCGGGTCGA CGACGAGCGC ATCGAGCTCG AACTGCTGGG CGGCTCGCTG GCGGTGCTGC TCGGCAGCGA CGAAGTGGCG CGCGAACTCA GCATCGAGAC CGATGCCGCG CGCCTGCTGC CGCTGGGCGC CGGGCTCTAC CGCATCGACG TGCCCGACGC CGAACGCGGC CACACCCACC TGCACGCCGC CACCGCCTGG CGCAACGGCC TGCGCATCGA GCAGCCGGCC GGCAGCTACC TGCTGCAGCC CGGCCAGCGC GCCGAGATCT ACGTCGACGG CGGTTTCCGG CTCGACACTC CCGAGGCCGA CGGCTTCGCC CGCTGGGCCA TGAACGACGA CGACTTGCGG CTGCAGCAGG CCTCGCGCGA CGCGCCGGTG CCCGACGAGA TGACCGGCGC CCACGAGCTC GATCGCCACG GCGACTGGAC CCGCTCGGCC GACTACGGCT GGGTCTGGTA CCCGCGCACC GTGGTGGTCG GCTGGGCGCC CTACCGCCAC GGCCGCTGGA GCTGGGTCTC GCCCTGGGGC TGGACCTGGA TCGACGACGC GCCCTGGGGT TTCGCGCCCT TCCACTACGG CCGCTGGGTC TGGTGGCGCG ACCGCTGGGG CTGGGTGCCC GGCGACCACA CGCCGCGGCC GGTCTACGCG CCGGCGCTGG TGGTCTGGAA CGGCCAGCCG GGCCTGTCGT GGTCGATCAG CATCGGCACC GGCGTGGCCT GGTATCCGCT CGCGCCGCGC GAGGTCTACG TGCCGGCCTA TGCCTTCAGC CCGCGCCACG TGCGCCTGCT CAACCAGCCG CACGTGCACG ACGGCCCGCT GCTGCGCCGC GTGATGGAAC GCCCCGACGA GGTGCTGCGC CACACGCCCT ACCGCTACCG CCAGTTCTCC GGCGCGGTCA GCACCGGCAT CGGCCGCGAT GGCCGTGACG GCCGCTTCTT CCGCCCGGCG CCCTGGCGCG GCGCGGTCGA GCTGCCACCA CGCATGCGCG CCCCGCAGGC GCCGCCGGTG GTGACGCGCA TCCAGCCGCC GCAACCGCCG CGCGAGCGCT GGGAGCGCGA CCGCCGGGAT CGCAACGAGC GCGGCGACCG GATCGACCGC GGCGATCGGT TCGATCGACC GGATCGTCAG CCGGCACCAC CGCAGCCGGA CATGCGCCAC CACGGCGACA TCGACCGCAA CCGTCCGCCC GGCGCCAACG CGCCACCCGC GCCGCCGCCC AACCCGTCGC AGCGCTTCGT GCCCGGGCAG GTGCCGATCC AGCCGGGACA AGCCGCGCGC CCGCAGCCCG GCCTGGCGCA ACCGGTGGCG CCGCAGCCCG GCGCGTCGTT CCCGGGGCTG CGCCCGCGCG ACGGCGCACG CCCCGACGGA CGCCCCGACG CGGATCCGGA CGGCCGCACC GACAACCGCC GCGACGGGCG TTTCGGCTCA CGGCCGGAGC TGGTCCCGGC CGCGCCACCG CCGGTCGCCG CGCCCGCACC GACGCCGGCG CGCACCCAGG CACCGGATCA GCCCCGCGCC CAGCCCCCTG TGCAGGCCGT CGCACCCGCG GCGCCCATCC AGCAGACACC GCCGCCACGC GGCAACTTTC CTGGCCTGGA CCGCGGCCAG CGCGAAGCCG GTGGCGGGCG CCCCGCCGCG CCACCCGCAC CGATGGTGCA AGCCGCCCCG GTGATGCCGG CCGCGCCACC GCCGGCGATG GTCGCCGCAC CACCGCCGGC TGTGGTCGTC ACCCCGCCGC CGCGCCCCGA ACAGCGCATC GCCGTGCCAC GCGCCGAACC GCCCCGACCG CCCGAAGTGC GCCAGGAGCA ACGTCGCGAC AATCCGCCGC AGCGCACGCA AGGGCGCCCG GACGGTCAGC CCGAACCGCG CCAGGACGGT CGCCGCGAGC GTTGGCCACC GGGCCGCGAG CAGTGA
|
Protein sequence | MFIKMCRPLW AMACLLLAAL LAGPGLARAA DDPPGRVGRI AWIDGDARLA RGDGGDTLDH ARDSLRNWPV TSGDELSVGN NSRAEIGIGS TRLRLGENSQ LLLRRVDDER IELELLGGSL AVLLGSDEVA RELSIETDAA RLLPLGAGLY RIDVPDAERG HTHLHAATAW RNGLRIEQPA GSYLLQPGQR AEIYVDGGFR LDTPEADGFA RWAMNDDDLR LQQASRDAPV PDEMTGAHEL DRHGDWTRSA DYGWVWYPRT VVVGWAPYRH GRWSWVSPWG WTWIDDAPWG FAPFHYGRWV WWRDRWGWVP GDHTPRPVYA PALVVWNGQP GLSWSISIGT GVAWYPLAPR EVYVPAYAFS PRHVRLLNQP HVHDGPLLRR VMERPDEVLR HTPYRYRQFS GAVSTGIGRD GRDGRFFRPA PWRGAVELPP RMRAPQAPPV VTRIQPPQPP RERWERDRRD RNERGDRIDR GDRFDRPDRQ PAPPQPDMRH HGDIDRNRPP GANAPPAPPP NPSQRFVPGQ VPIQPGQAAR PQPGLAQPVA PQPGASFPGL RPRDGARPDG RPDADPDGRT DNRRDGRFGS RPELVPAAPP PVAAPAPTPA RTQAPDQPRA QPPVQAVAPA APIQQTPPPR GNFPGLDRGQ REAGGGRPAA PPAPMVQAAP VMPAAPPPAM VAAPPPAVVV TPPPRPEQRI AVPRAEPPRP PEVRQEQRRD NPPQRTQGRP DGQPEPRQDG RRERWPPGRE Q
|
| |