| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0419 |
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| Symbol | |
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| ID | 6163656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 461152 |
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| End bp | 461988 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641663168 |
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| Product | shikimate dehydrogenase substrate binding subunit |
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| Protein accession | YP_001789459 |
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| Protein GI | 171057110 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATCC GTGGCACCAC CGGCCTGATC GCCCACATCG GCTACCCGAC CCACGCCTTC
AAGGCGCCGA TGATCTACAA CCCGTATTTC GAGCAGGCCG GCATCGACGC CGTCGTCATG
CCGATGGGCT GCAAGCCCGA GGACTACCCG GCCTTCCTGC GCCTGGTGTT CAGGCTCAGC
AACATCCGCG GCGCGCTGAT CACGATGCCG CACAAGGTCA CCACCGTGGG CCTGCTCGAC
GAGGTCTCGC CCACCGCGCA GATCGCCGGC GCCTGCAACG CGGTGCGCCT CGGGCCGGAC
GGCCAGCTGC AGGGCGACAT GTTCGACGGC GAGGGTTTCG TGCGCGGCCT CCAGCGCAAG
GGGCTCGACC TGCACGGCAA GCGCGTGCTG GTGGTCGGCG CCGGCGGCGT CGGCTCGGCG
ATCGCGGCCT CGCTGGCGGC TGCCGGCATC GGTGCGATCG GGCTGTTCGA CGCCCGTGCC
GAATCGGCCG AGGCGCTGGG CCAGCGCCTG AGCCAGCATT ACAAGACTCT GGACGTGCGC
ACCGGCAGCA ACGATCCGGC CGGCTACGAC GTGGTGGTCA ACGCCACGCC GATGGGCATG
AACGACGGCG ACGAGCTGCC GATGGACGTG TCGCGCATCG CGCCCGGCAG CTTCGTCGGC
GAGGTGGTGA TGAAGACCGA GATGACGGCT TTCCTGCGCG CCGCCCAGGC GCGTGGCTGC
GCGGTGCAGA TCGGCTCGGA CATGCTGTTC GAGCAGATCC CGGCCTACCT CGAATACTTC
GGCCTGCCGA CCACCACGCC CGAGGTGCTG CGCTCGGTGG CGCGCCTCAG CTACTGA
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| Protein sequence | MNIRGTTGLI AHIGYPTHAF KAPMIYNPYF EQAGIDAVVM PMGCKPEDYP AFLRLVFRLS
NIRGALITMP HKVTTVGLLD EVSPTAQIAG ACNAVRLGPD GQLQGDMFDG EGFVRGLQRK
GLDLHGKRVL VVGAGGVGSA IAASLAAAGI GAIGLFDARA ESAEALGQRL SQHYKTLDVR
TGSNDPAGYD VVVNATPMGM NDGDELPMDV SRIAPGSFVG EVVMKTEMTA FLRAAQARGC
AVQIGSDMLF EQIPAYLEYF GLPTTTPEVL RSVARLSY
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