Gene Lcho_0379 details

Gene Information

• Locus tag: Lcho_0379
• ID: 6163869
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 413479
• End bp: 415563
• Gene Length: 2085 bp
• Protein Length: 694 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 641663128
• Product: histidine kinase
• Protein accession: YP_001789419
• Protein GI: 171057070
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.0254109
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCTCCTC GCGGCCCGAT GGGCTTGCCG CCTTTTGTCG ATTCCGACCT GCCGCCGCGC 
CAGGCCGGGC GTGCGGCCGT GCGGCGCGAG TCGTGGTTTG CCGGCCTCGG TGCCGGCGCC 
GATTCGACCC GGCCGCAGGA AGAGGACGAA CCCCGCGCGC CGGACCCTGT TCAGCCGCCG 
CGTCGCCGCC TGGCCTGGCC GGGCCGGCCG GCGGCCGACA AGTCGATCCC GCTGCCCGAC 
ACCGTGCCGG CCGACCTGTT CCAGGCGCCT GCGCCGCCAG CGCCCGAGCC CGCGGCGGCG 
CCGACCCGCC CGCCCAGGTC CGGCCCGCCG ACCGAAGCCC CGGCCGATTC GCAGCGCGAC 
GAATCCATCC TGCGCGCCGA AGCGGACACC ACGCCGCCGA AGGCCTTCCA GCGCATCTTC 
CGCGGCTTCG TCGTGGCCCG TGCGCTGCTG GGCGTGCTGC TGCTGGCGAT GCAGGGCGTC 
ATCACCGTCT ATGCGAGCGT CGGCCCGTCG TTGTCGGGGC TGGCGGTGTG TGCCGCCTAC 
AGCCTGAGCA GCCTGTGGCT GCTGGCGCAG GTCGAGATGC ACTGGCCGCC GCGACTCGGC 
CCGGCGCTCG GCGCCGGCGG CCAGCTGCGG CGCCGCTGGG TGCTGGTGAC GGTCGGGGTC 
GATCTGCTGT GTTTCTCGCT GCTGCTGGTG GCGACCGCGC AGGGGCCGCT CAACATCGGC 
GCCTTGCTGC TGCTGCCGGT GCTGATGGCC GGGGCGCTGA TGCCGCGCCG GGCCGGCGTG 
GCGGTGGCGG CCGGCGTGGT GATCGTCATG CTGGCGGGCG CCTGGTGGCG GGTGCTGGCC 
GGGGCCGAGA TGGCGGCCCA GCTCACCCAG GCCGGCATGT CGGGCGCCGT GGTGTTCGCG 
ATGGCGCTGC TGACCACCGA GATGGCCGAG CGGCTGGCGC GCCAGGAGGT CACCGCCCGC 
AGCACCCTCG AGCTGGCGCG CCAGCAGGCG CTGCTCAACC GCCTGATGAT CGAGGAGATG 
CAGGACGGCG TGATGGTGGT CGACCGCATC GGCCACGTGC GTGCCGCCAA CCCGGCGGCG 
ATGGCGCTGA TCGGCGCACC GCAGGGCCGC CGTTTTGCCG CCTTCGACCT GCAGGAGCAC 
GAGGCCTGGT TGCCGTTGTG GACGGCGCTC GAGCGCGGTT ATGCGCACGG CATCTGGCCC 
GAGGGCGGCG AAGAGATCAG CCTGCAGCTC AACCAGGGCC CGCACATCGA GGCGCGTGGC 
CTGCGCGTGC GCATGCGCTT CACGCGGCGC CGCGATGCCC GCTCGGGCGA GGCGCTGTGC 
GTGCTGTTCC TCGAGGACCT GCGCATGCTG CGGGCCCGCG CACGGCAGGA GAAGCTGGCT 
GCGATGGGCC GGGTCTCGGC CGGCATCGCG CACGAGATCC GCAATCCGCT GGCCGCCATC 
TCGCAGGCCA ATGCCTTGCT GGCCGAGGAC CTCACCGTGC CGGCGCAGCG CCAGCTCGCG 
CGCATGGTGG CCGACAACGT CGAGCGCCTG CAGCGCATCG TCGACGACGT GATGGAGGTC 
GCCCCTGGCG CGCCGCGTGA TGCCCCCGCG ATCGACCTGC CGTTGCAGGT GCAGGCCCTG 
TGCGCCGAAT GGGCCCGCAC CGCCGGCCTG CCGCAGGCCG GCCAGAGCCC GCTGCGGGTC 
GACGTGGACG AGGGTGTCAT GGCCGTCAAG TTCGATCCCG ACCACCTGCG CCGGGTGCTC 
GTCAACCTGC TCGAGAACGC CCTGCGCCAC GGCAGCGGCC GCCCCGATGC GCTGTGGGTG 
CAGGTGCAGT CGCGCGGCAC CGACGAGGTG GTGCTGTCGG TGGCCAGCGA TGGTGCGCCG 
ATCGCCGGCG ATGTCGAGCC CTACCTGTTC GAGCCCTTCT TCTCCACCCG CAGCCGCGGC 
AGCGGGCTGG GCCTGTACAT CTGCCGCGAG CTGTGCGAGC GCTACGGCGC CACCATCGAA 
TACCGCCCGC GTGGCGCGGG TGCCCGCCAT CGCAACGTGT TTGTCCTGAC CCTGCCGCGC 
AGGGTGCCGG TGCCGATGTC GGCGCGCCAA CCGAAGTTTT CATGA 

 

Protein sequence

MPPRGPMGLP PFVDSDLPPR QAGRAAVRRE SWFAGLGAGA DSTRPQEEDE PRAPDPVQPP 
RRRLAWPGRP AADKSIPLPD TVPADLFQAP APPAPEPAAA PTRPPRSGPP TEAPADSQRD 
ESILRAEADT TPPKAFQRIF RGFVVARALL GVLLLAMQGV ITVYASVGPS LSGLAVCAAY 
SLSSLWLLAQ VEMHWPPRLG PALGAGGQLR RRWVLVTVGV DLLCFSLLLV ATAQGPLNIG 
ALLLLPVLMA GALMPRRAGV AVAAGVVIVM LAGAWWRVLA GAEMAAQLTQ AGMSGAVVFA 
MALLTTEMAE RLARQEVTAR STLELARQQA LLNRLMIEEM QDGVMVVDRI GHVRAANPAA 
MALIGAPQGR RFAAFDLQEH EAWLPLWTAL ERGYAHGIWP EGGEEISLQL NQGPHIEARG 
LRVRMRFTRR RDARSGEALC VLFLEDLRML RARARQEKLA AMGRVSAGIA HEIRNPLAAI 
SQANALLAED LTVPAQRQLA RMVADNVERL QRIVDDVMEV APGAPRDAPA IDLPLQVQAL 
CAEWARTAGL PQAGQSPLRV DVDEGVMAVK FDPDHLRRVL VNLLENALRH GSGRPDALWV 
QVQSRGTDEV VLSVASDGAP IAGDVEPYLF EPFFSTRSRG SGLGLYICRE LCERYGATIE 
YRPRGAGARH RNVFVLTLPR RVPVPMSARQ PKFS