Gene Lcho_0336 details

Gene Information

• Locus tag: Lcho_0336
• ID: 6160567
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 365484
• End bp: 366041
• Gene Length: 558 bp
• Protein Length: 185 aa
• Translation table: 11
• GC content: 75%
• IMG OID: 641663085
• Product: hypothetical protein
• Protein accession: YP_001789376
• Protein GI: 171057027
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG1871] Chemotaxis protein; stimulates methylation of MCP proteins

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 42
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCGGCCC CGACCCCGAT CCCGCCCACG CACCGGCCCG TGCCGCCCTG CGCGCCTGCG 
TCCCGCCCGG TCGACCTGCC GCCACCGCGG TCGGTGCAGC TGGCGCCGGG CGATGTCGTC 
GTGGGCACCC GGGGCGACCG CTTCGAGACC CTGCTCGGCT CCTGCGTGGC GGTGGTGCTG 
AGCGACCCGC GGCGCACCGT GGGCGCGATG TGCCACATCG TGCATGCCGG CGAGCCCGGC 
CGCGACACGC CCGGCGACAC CACCTTCGCA CGCCCCGCGC TGCAGGCGAT GGCCGACGGC 
CTGGGCCGCA TCGGCCTCTC GGCGCGGCTG TGCCAGGCGC GGGTCTACGG CGGCGGCAAC 
ATGTTTCCCC AGCTCGTCAA GGCGTCCCAC ATCGGCGACA CCAACGGCCA GCGTGTGCTG 
GCGCTGCTGG CCGCGGCCGG CATCGAGGTG GTCGCGCAAT CGCTGGGCGG CAGCTGCTAT 
CGCAAGCTGG CCTGGGTGGT CGGCCCGGCC GAGCCCGAAT GCATCCGGGT CGACGTGCCG 
GTCCTCTCCA ACAACTGA 

 

Protein sequence

MPAPTPIPPT HRPVPPCAPA SRPVDLPPPR SVQLAPGDVV VGTRGDRFET LLGSCVAVVL 
SDPRRTVGAM CHIVHAGEPG RDTPGDTTFA RPALQAMADG LGRIGLSARL CQARVYGGGN 
MFPQLVKASH IGDTNGQRVL ALLAAAGIEV VAQSLGGSCY RKLAWVVGPA EPECIRVDVP 
VLSNN