| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0181 |
|---|
| Symbol | |
|---|
| ID | 6161187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 189947 |
|---|
| End bp | 191944 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641662925 |
|---|
| Product | sodium/hydrogen exchanger |
|---|
| Protein accession | YP_001789221 |
|---|
| Protein GI | 171056872 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0475] Kef-type K+ transport systems, membrane components
[COG0569] K+ transport systems, NAD-binding component |
|---|
| TIGRFAM ID | [TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGCA CCCTCGAACT CGCTCTCCTC TATCTGCTTG CCGCGGTGCT CGGTGTGGTC
GGCTGCCGTC TGCTGAAGTT GCCGGCGATG CTCGGCTACC TGATCGTCGG CGTGCTGATC
GGCCCCAATG CGCTGGCCCT GGCGCGCGAT TCGGTGGGCG TGAGCTACCT GGCCGAGTTC
GGCGTGGTGT TCCTGATGTT CGTCATCGGG CTCGAGTTCA ACCTGCCCAA GCTGCGCAGC
ATGTGGCGAC TGGTGTTCGG GCTCGGCATG GGCCAGGTGA CGCTGACGAT TCTGGGCGCG
GTGATCGGCA ACGTCCTGCT GACCTGGCTG TTCAGCATGG CGGCACGCCC CTGGGAACTG
CACTGGACCG GCGCGGTGGC GCTGGGCGCG GCGCTCGCGA TGTCGAGCAC CGCCATCGTC
GCCCGGATGA TGGCCGAGCG GCTCGAACTC GAAAGCGAAC ACGGTCGCCG GGTCATGGGC
GTGCTGCTGT TCCAGGATCT GGCCGTGGTG CCGCTGCTGG TGCTGATCCC CTCGCTGGCG
CAAGGTGGCG ACGACCTCTG GCGCACCCTC GGCCTGGCGC TGGTCAAGGC CGTGGTACTG
CTCGGTGTGC TGCTGTGGGG CGGCCAGCGG GCGATGCGCT GGTGGCTCAC GCGGGTGGCC
AAGCGCAAGA GCGAAGAGCT GTTCATCCTG AACCTGCTGC TGATCACGCT GGGCCTGGCC
TGGCTGACCG AACACGCCGG TCTGTCACTG GCGCTGGGCG CCTTCGTCGC CGGCATGCTG
ATCGCCGAGA CCGAATACAA GCACCAGGTC GAGACCGACA TCCGCCCGTT CCACGACGTG
CTGCTCGGGC TGTTCTTCAT CACCGTGGGC ATGAAGCTCG ACTGGCGCCC GGTGCTCGAA
CGCTGGGATC TGGTGCTGCT GCTGAGCACC GCGCCGCTGC TGGCCAAGGG CGTGCTGGTG
ACGCTGCTGG CGCGCGCGTT CGGCGCGACG CCAGGGGTGG CGATCCGCAC CGGCCTGTAC
CTGGCGCAGG CGGGCGAGTT CGGTTTCGTG CTGCTGTCGC TGGGCGCCGA GCAGCACCTC
ATCGCCGCCC GCTGGATGAG CCCGGTGCTG GCCTCGATGG TGCTGTCGAT GCTGGCCGCG
CCGTTCCTGA TCCTGCACAG CAACCGCATC GTGATGCGCC TGGCCGCGAG CGACTGGCTG
ATGCAGTCGG TGCAGCTGAC CACCATCGCC AAGAAATCGA TCCGCACCGA GGCACACGTG
ATCATCTGCG GCTACGGCCG CGCCGGCCAG AACCTGGCGC GCCTGCTCGA CCAGGAACAC
ATCCCCTACA TGGCGCTCGA CCTCGACCCC GACCGCGTGC GCCAGGCCGC GGCGGCGGGC
CAGAGCGTGG TGTTCGGCGA CGCCGCGCGG CTGCAGAGCC TGATGGCCGC CGGCCTGGCG
CGTGCCAGCG CGGTGGTGGT CAGCTACCAC GACACGTCCT CGGCCCTGAA GGTGCTGCAC
CACGTCAACG AACACGCCGC CCACGTGCCG GTGGTGGTGC GCACGATCGA CGACACCGAC
CTCGAGAAAC TGCGCGCCGC CGGCGCCACC GAGGTCGTGC CCGAGGCGAT CGAGGGTTCG
CTGATGCTGG CCAACCATGC GCTGGCGCTG GTGGGCGTGC CGATGCGGCG CGTGCTTCGC
ATCACCCAGG ACGCCCGTGA CGCACGCTAC AGCCTGCTGC GCGGCTATTT CCACGGCATC
GACGACGACA CCGTGCAGGA GCTCGAACAG GAGCGGCTGC TGTCGGTCAG CCTGCCGGCC
GGGGCACCGA CCGTCGGCCA CGAACTCGGC GATCTGGCCT TGCAGGCGCT CGGCGTGGCG
GTGATCTCGC TGCGCCGCGC CAGCGGCCAG GTTCAGGACG CCACCGATGC ACTGCAACTG
CGCGGCGGCG ACGTGCTGGT GCTGCGCGGC CTGCCCGAAC CGCTCGCGCT GGCCGAAAGC
CGGCTGCTCA AGGGCTGA
|
|---|
| Protein sequence | MASTLELALL YLLAAVLGVV GCRLLKLPAM LGYLIVGVLI GPNALALARD SVGVSYLAEF
GVVFLMFVIG LEFNLPKLRS MWRLVFGLGM GQVTLTILGA VIGNVLLTWL FSMAARPWEL
HWTGAVALGA ALAMSSTAIV ARMMAERLEL ESEHGRRVMG VLLFQDLAVV PLLVLIPSLA
QGGDDLWRTL GLALVKAVVL LGVLLWGGQR AMRWWLTRVA KRKSEELFIL NLLLITLGLA
WLTEHAGLSL ALGAFVAGML IAETEYKHQV ETDIRPFHDV LLGLFFITVG MKLDWRPVLE
RWDLVLLLST APLLAKGVLV TLLARAFGAT PGVAIRTGLY LAQAGEFGFV LLSLGAEQHL
IAARWMSPVL ASMVLSMLAA PFLILHSNRI VMRLAASDWL MQSVQLTTIA KKSIRTEAHV
IICGYGRAGQ NLARLLDQEH IPYMALDLDP DRVRQAAAAG QSVVFGDAAR LQSLMAAGLA
RASAVVVSYH DTSSALKVLH HVNEHAAHVP VVVRTIDDTD LEKLRAAGAT EVVPEAIEGS
LMLANHALAL VGVPMRRVLR ITQDARDARY SLLRGYFHGI DDDTVQELEQ ERLLSVSLPA
GAPTVGHELG DLALQALGVA VISLRRASGQ VQDATDALQL RGGDVLVLRG LPEPLALAES
RLLKG
|
|---|
| |