Gene Lcho_0168 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0168 
Symbol 
ID6160653 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp175143 
End bp175832 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content68% 
IMG OID641662912 
Productglutamate synthase alpha subunit 
Protein accessionYP_001789208 
Protein GI171056859 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0070] Glutamate synthase domain 3 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAATC TGACCTTCGA CCTGAGCCGC CAGACCGTGC GCGAGCTCAA CCAGCACCTG 
CACGCCCCGG CCGAAACGCT CAAGGGCCAG CACGTCACGG TGCTCAATCC CGACGGCGCG 
CACAACATCG CCGTGGGCAT CAATGCCCCG GTGAAGGTCA CCGTGGCGGG CCACGCCGGC 
TACTACGCCG CGGGCATGAA CAAGTTCGCC GACGTCACCA TCGACGGCAG CGCCAGCACC 
GGTGTGGCCG AGAACATGAT GAGCGGCAAG GTGCACGTCA AGGGCTTCGC GTCCAACGGC 
GCGGGCGCCT CGGCACACGG CGGCCTGCTG GTCATCGACG GCGATGCGGG CCTGCGCTGC 
GGCATCTCGC TCAAGGGCGC CGACATCGTG GTCGGCGGCT CGGTCGGCAG CTTCTCGGGC 
TTCATGGCCC AGGCCGGCCG GATGGTGGTC TGCGGCAATG CCGGCGACGC CTTGGGCGAC 
TCGCTCTACG AAGCCGTGAT CTACGTGCGC GGCACGATCA AGTCGCTCGG CGCCGATGCA 
CGCATCGAAC CGCTCGCCGA TGCCGACATC AGCGCACTGG CCGGCCTGCT CGACCAGGCC 
GGGCTGTCGC ACGACCCGCA CGACTTCAAG CGCGTGGCTT CGGCCCGCAC GCTCTATCAC 
TGGAATGCCG ACGCCGACCA GGACTACTGA
 
Protein sequence
MENLTFDLSR QTVRELNQHL HAPAETLKGQ HVTVLNPDGA HNIAVGINAP VKVTVAGHAG 
YYAAGMNKFA DVTIDGSAST GVAENMMSGK VHVKGFASNG AGASAHGGLL VIDGDAGLRC 
GISLKGADIV VGGSVGSFSG FMAQAGRMVV CGNAGDALGD SLYEAVIYVR GTIKSLGADA 
RIEPLADADI SALAGLLDQA GLSHDPHDFK RVASARTLYH WNADADQDY