Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0079 |
Symbol | |
ID | 6159727 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 80583 |
End bp | 82283 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641662823 |
Product | malonate decarboxylase, alpha subunit |
Protein accession | YP_001789119 |
Protein GI | 171056770 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG4670] Acyl CoA:acetate/3-ketoacid CoA transferase |
TIGRFAM ID | [TIGR01110] malonate decarboxylase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.283952 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGCCG TTGCCACCTC GCCCGCCGCT GCGGCAGCCA CCACCACCGC CTGGGATCAC AAGGCGCGCC GCCGCCAGGC CCGCCTGGCG CGCGCGGCCG AAGAGGTAGC CGCGCGTGGC AAGTGCGTGC CGCATGCCGA CGCCGTGGCG CTGCTGCACG CCGTGCTCGA ACCCGGCGAC CGCGTCTGCC TGGAAGGCAA CAACCAGAAG CAGGCCGACT TCCTGGCCCG CGCGCTGACG CAGCTCGACC CGCAGCGGGT GCACGACCTG CACATGGTGC AGTCGGTGCT GGCGCTGCCC GAACACCTCG ACCTGTTCGA GGACGGCATC GCCAGCCGGC TCGACTTCTC GTTCTCGGGC CCGCAGGGCG CGCGGCTGGC GCAGCTGGTG TCAGCCGGCC AGATCCGCAT CGGCGCGATC CACACCTACC TCGAACTGTT CGCGCGCTAC TTCGTCGACC TGACGCCGCA GGTGGCGCTG ATCGCCGCGC AGTCGGCCGA CCGCGAGGGC AACCTCTACA CCGGCCCCAA CACCGAGGAC ACGCCGGCGA TCGTCGAGGC CACCGCGTTC AGCGGCGGCA TCGTGATCGC GCAGGTGAAT CAGATCGTGG ATCGGTTGCC GCGGATCGAC GTGCCGGCCG GCTGGGTCGA CTTCGTGATC GAGGCGCCGA CGCCGCATTT CATCGAGCCG CTGTTCACCC GCGACCCGGC GCAGATCAGC GAGATCCAGG TGCTGATGGC CATGATGGCG ATCAAGGGCA TCTACGCCGA ATACGGCGTG CAGCGCCTGA ACCACGGCAT CGGCTTCGAC ACCGCGGCGA TCGAACTGCT GCTGCCGACC TACGGCGAAT CGCTCGGCCT CAAAGGCAAG ATCTGCCGCC ACTGGGCGCT CAATCCGCAC CCGGCGCTGA TCCCGGCGAT CGAGGCGGGC TGGGTCGAGT CGATCCACTC GTTCGGCTCC GAGCTCGGCA TGGAGGACTA CATCCGCGCC CGCTCCGACG TCTTCTTCAC CGGCGCCGAC GGCTCGCTGC GCAGCAACCG CGCCTTCTGC CAGGCGGCCG GCCACTATGC CTGCGACCTG TTCATCGGCT CGACGCTGCA GATGGACCTG GCCGGCAACA GCTCGACCGC AACGCTCGGC CGCATCGCCG GTTTCGGCGG CGCGCCCAAC ATGGGCGCCG ACGCGCGCGG CCGGCGCCAC GCCAGCCCAG CCTGGCTGAA GGCCGGCGCG CAGGCCCGCG AAGGGCTCAC CGGTGCGCGC GGCACACCAC GTGGCCAGAA GCTGGTGGTG CAGATGGTCG AGACCTTCCG CGAGCACATG CAGCCGGCTT TCGTCGAGCG GCTCGATGCC TGGCAGCTCG CCGAGCAGGC CGGCATGGCG CTGCCGCCGA TCATGATCTA CGGCGACGAC GTCAGCCACG TGCTGACCGA AGAAGGCATC GCCAACCTGC TGCTGTGCCG CAGCGACGAG GAGCGCGAGC AGGCGATCCG CGGTGTCGCC GGCTACACGC CGCTGGGCCT GGGCCGCGAC CGCCGCGCGG TCGAGAACCT GCGCGACCGC GGCGTGATCC GCCGCCCGGC CGACCTCGGC ATCGACCCGC GCGACGCCAC CCGCAACCTG CTGGCCGCAC GCTCGATGCG CGACCTGGTG CGCGCCTCCG GCGGGCTCTA TCAACCGCCC AAACGGTTCA GGAACTGGTG A
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Protein sequence | MNAVATSPAA AAATTTAWDH KARRRQARLA RAAEEVAARG KCVPHADAVA LLHAVLEPGD RVCLEGNNQK QADFLARALT QLDPQRVHDL HMVQSVLALP EHLDLFEDGI ASRLDFSFSG PQGARLAQLV SAGQIRIGAI HTYLELFARY FVDLTPQVAL IAAQSADREG NLYTGPNTED TPAIVEATAF SGGIVIAQVN QIVDRLPRID VPAGWVDFVI EAPTPHFIEP LFTRDPAQIS EIQVLMAMMA IKGIYAEYGV QRLNHGIGFD TAAIELLLPT YGESLGLKGK ICRHWALNPH PALIPAIEAG WVESIHSFGS ELGMEDYIRA RSDVFFTGAD GSLRSNRAFC QAAGHYACDL FIGSTLQMDL AGNSSTATLG RIAGFGGAPN MGADARGRRH ASPAWLKAGA QAREGLTGAR GTPRGQKLVV QMVETFREHM QPAFVERLDA WQLAEQAGMA LPPIMIYGDD VSHVLTEEGI ANLLLCRSDE EREQAIRGVA GYTPLGLGRD RRAVENLRDR GVIRRPADLG IDPRDATRNL LAARSMRDLV RASGGLYQPP KRFRNW
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