| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_5928 |
|---|
| Symbol | |
|---|
| ID | 6128732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | - |
|---|
| Start bp | 3123147 |
|---|
| End bp | 3123797 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641653012 |
|---|
| Product | type III secretion system protein |
|---|
| Protein accession | YP_001779539 |
|---|
| Protein GI | 170738279 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4790] Type III secretory pathway, component EscR |
|---|
| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.128981 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCAGA TTAACGAACT GACCGCGCTG CTGATCGCGG TCATCGCGAT CGGCCTGATC
CCGTTCGTCG CGATGGTCGT GACTTCGTAC GCGAAGATCG TCGTCGTGCT CGGGCTGCTG
CGCAACGCGC TGGGCGTGCA GCAGGTGCCG CCGAACATGG TGCTCAACGG CATCGCGATC
CTCGTGACGC TCTACGTGAT GGCGCCGATC GGGATGAGCG CGGCCGACAC GATGCGTCAC
GAGCAACTGG CGAATTCGCC GGCGGAAATC ATGGTTCAGG CGTTCGGCGC GTCGCAGGCG
CCGTTCCGGA CTTTCCTCAA GGCGCATTCG CGTGAACGCG AGCGCCTGTT CTTCATGCGC
TCGGCGCACG TGATCTGGCC GGAGAGTCTC GCGAACGCGC TGCACGAAGA CGACCTGATC
GTGCTCGCGC CCGCGTTCAC GCTGACCGAG CTCGCCGACG CGTTCAAGAT CGGCTTCCTG
CTGTACATCG CGTTCATCAT CGTCGATTTC GTGATCGCGA ACGTGCTCCT GGCGATGGGC
CTCAACCAGA TCCAGCCGAC CAACGTCGCG ATCCCGTTCA AGCTGCTGCT GTTCGTGGCG
ATGGACGGCT GGTCGGCGCT GATTCACGGC CTGATCCTCA CGTACAAGTA G
|
|---|
| Protein sequence | MTQINELTAL LIAVIAIGLI PFVAMVVTSY AKIVVVLGLL RNALGVQQVP PNMVLNGIAI
LVTLYVMAPI GMSAADTMRH EQLANSPAEI MVQAFGASQA PFRTFLKAHS RERERLFFMR
SAHVIWPESL ANALHEDDLI VLAPAFTLTE LADAFKIGFL LYIAFIIVDF VIANVLLAMG
LNQIQPTNVA IPFKLLLFVA MDGWSALIHG LILTYK
|
|---|
| |