| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_5918 |
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| Symbol | |
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| ID | 6128722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia MC0-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010515 |
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| Strand | + |
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| Start bp | 3114144 |
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| End bp | 3115910 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641653002 |
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| Product | YscC/HrcC family type III secretion outer membrane protein |
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| Protein accession | YP_001779529 |
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| Protein GI | 170738269 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.033473 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0245572 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACCT TCCGCTTCGG CCTGCTGTTC ATCCTCGTCG CCGCATGCGT GGCGGCGACG
GTCCACGCCG CGCCCGTCAA CTGGCATACG CGCATGGTCG ACTACACGGC CGACTCGAAG
GACATCAAGG ACGTGCTGCG CGATTTCGCC GCCAGCCAGG GCATTCCGGC CGATATCTCG
AAGGACGTGC AGGGCAGCGT CACGGGCAAG TTCCACATGC CGCCGCAGCG CCTGCTCGAC
ACGCTCGCGT CGTCGTTCGG CTTCGTCTGG TACTACGACG GCCAGGTGCT CGACATCGTG
ACGCCCGACG AAATGAAGAG CACGCTGATC AAGCTCGATC ACGGCAGCAC CGCGCAACTG
CGCAGCACGC TCGCGGCGAT GAACGTGACC GATCCGCGCT TCAGGATCAC CTATGACGAC
GTGCAGGGCG CGGCGATCGT GAACGGGCCG CCGAACTACG TCAAGCTCGT CGGCGATGTC
GCCCAGCGGC TCGATACGAC GACGCGGCAC CGCGCCGGTA CGGTCGTGCA GGTTTATCCG
CTGCATCACG CGTGGGCGAT GGATCGCTCG GTGGTCGCCG ACGGGCAGAG CATGACCCTG
CTCGGTGTCG CGACGGTGCT CAACAACGTC TATCACCCGC AACAGGGCGG CGGCGGCAAT
TCGGGTGGCG GCGGGCGCGC GCCGAACGTC CAGCGCGCGC AGCCGATGGG CAACGTCGGC
GGCGCGCGCA TGCAGGCGGG CGGACCGTCG GCGCCGCTGC CGCCGGGCAC GACGCTGGCG
AACGGCGAGT CGTCGCTGGG CTTGCTGTCG GGCCTGTCGG GGCGGCCGTC GCAACAACTG
TCGTCGGCGG TCGCCAGCTC GGGGCCGACT GCCGGCGGGC AGGCATCGGG CGGCGGCGAC
GAGGAAGCGC TGCCGGTCAT CGAGGCCGAC CAGCGCACCA ACTCGGTCCT GATCCGCGAC
ACGCCCGACC GGATGTACCA GTATCCGGCG CTGATCCAGC GGCTCGACGT GAAGCCGCGC
CTGATCGAGA TCGAGGCCCA CATCTTCGAG GTCGATACGT CGTCGATCCG CCAGCTCGGC
GTGAACTGGA CCGCGCACAA CAGCCACATC GACCTGCAGA CGGGCAACGG CCTCGGTGCG
CAGAACACCT ACGGCGGCAC GCTGACCCAG AATTTCGGCA ACACGACGCT GGCCGGCAAC
GTGACGGCGG CGGCGATGCC GGTGGGCGGC GTGCTGTCGG CGGTGATCGG CAACGCGGGC
CGTTATCTGA TGGCGAACGT GTCGGCGCTG GAAGAGCAGA ACCTGGCGAA GATCGATGCC
AGCCCGAAAG TCACGACCCT CGACAACATC GAAGCCGACA TGGCGAACCA GACGCAGTTC
TTCGTGCGCG TGAGCGGATA CACGTCGGCC GACCTGTACA GCGTGTCGAC CGGCGTGTCG
CTGCGCGTGC TGCCGATGGT CGTCGACGAA GGCGGCCGAA CCCAGATCAA GCTCGACGTC
GCGATCCAGG ACGGCCAGCT CACGTCGCGG ACCGTCGACA ATATCCCGGT GATCTCGAGC
ACGAACATCA ATACGTCCGC TTTCGTCAAC GAAGGCGAGG CGCTGTTGAT CGCCGGCTAC
AAGAACGACG GCCGCATCGA CACGACGACC GGAGTGCCCG TTCTTTCAAA AATCCCCGTA
ATCGGTAATT TGTTCAAATA TACGGATCGC GAGAACACCA GGATGGAACG TCTGTTTCTA
CTGACGCCTC GAATCATCGA GCTATGA
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| Protein sequence | MPTFRFGLLF ILVAACVAAT VHAAPVNWHT RMVDYTADSK DIKDVLRDFA ASQGIPADIS
KDVQGSVTGK FHMPPQRLLD TLASSFGFVW YYDGQVLDIV TPDEMKSTLI KLDHGSTAQL
RSTLAAMNVT DPRFRITYDD VQGAAIVNGP PNYVKLVGDV AQRLDTTTRH RAGTVVQVYP
LHHAWAMDRS VVADGQSMTL LGVATVLNNV YHPQQGGGGN SGGGGRAPNV QRAQPMGNVG
GARMQAGGPS APLPPGTTLA NGESSLGLLS GLSGRPSQQL SSAVASSGPT AGGQASGGGD
EEALPVIEAD QRTNSVLIRD TPDRMYQYPA LIQRLDVKPR LIEIEAHIFE VDTSSIRQLG
VNWTAHNSHI DLQTGNGLGA QNTYGGTLTQ NFGNTTLAGN VTAAAMPVGG VLSAVIGNAG
RYLMANVSAL EEQNLAKIDA SPKVTTLDNI EADMANQTQF FVRVSGYTSA DLYSVSTGVS
LRVLPMVVDE GGRTQIKLDV AIQDGQLTSR TVDNIPVISS TNINTSAFVN EGEALLIAGY
KNDGRIDTTT GVPVLSKIPV IGNLFKYTDR ENTRMERLFL LTPRIIEL
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