| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_5428 |
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| Symbol | |
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| ID | 6128238 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia MC0-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010515 |
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| Strand | + |
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| Start bp | 2553272 |
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| End bp | 2555488 |
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| Gene Length | 2217 bp |
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| Protein Length | 738 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641652518 |
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| Product | type III secretion FHIPEP protein |
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| Protein accession | YP_001779045 |
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| Protein GI | 170737785 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4789] Type III secretory pathway, component EscV |
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| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.158228 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGAAC CGAAGGCGCT CCCCCGCGAC TGGCAGCGGT TGTTTTCCGC CGGCCGCGGC
GTGTCCGGAC GGCGCCTCGG GGGCGCATCG CCGCGCGCCG ACCTGTTTCT CGCAACCTTC
ATCGTCGCGG TCGTCGCGCT GTTCATCCTG CCGCTGCCGC AGGCCGCGCT CGACGGGATG
ATCTCGTTGA ATCTCGCGGC GAGCGTCGTG CTGCTGACGG TGTCGACCTA CGTGCCGTCG
GCGGTCAGCT TCTCGTCGTT TCCCGCGCTG CTGCTGTTTA CGACGCTGTT CCGGCTCGCG
CTGAACATCG CGTCGTGCAA GCTGATCCTG CTGCATGCGA ACGCTGGCCA CGTGATCGAC
GCGTTCGGGC GGCTGGTGGT CGGCAACAAT GTGGTGGTGG GCGGCGTGGT GTTCCTCGTG
ATCGCGGTCG TGCAGTTCAT CGTGATCGCG AAGGGGTCGG AGCGCGTGGC CGAAGTCGGC
GCGCGCTTCT CGCTCGACGC GATGCCGGGC AAGCAGATGA GCATCGACGC GGACCTGCGC
GCGGGCATCA TCAGCGCCGA CGAGGCGCGC GAGCGGCGCG AGAAGCTCGA GCAGGAATCG
CAGATGCACG GCGCGATGGA CGGCGCGATG AAGTTCGTGA AGGGCGACGC GATCGCGGGC
CTCGTGATCG CGTTCATCAA CATCGTCGCG GGGATCGCGG TCGGCACGCT GATGCACGGG
ATGGACATCG GCGAGGCGCT GCAGCGTTAC GCGATCCTGA CGGTCGGCGA CGGGATGGCG
TCGCAGATTC CGTCGCTGCT GGTATCGATC GCGGCCGGCA TCGTGACCAC GCGCGTCGCG
ACGCGCGATG CACGGCAGCG GCAGCTCGGC GAACAGCTCG GCGAGCAACT GGGCGCACAC
CCGCGCGCGC TGCTGATCGC GGCGTTCGTG CTGAGCGGTT TTCTCGTCGT GCCCGGTTTT
CCGAAATGGT CGTTCGCGCT GATCGCGCTC GGCCTCGGCG CCTTCGCGTT CTCGCAACTG
AAGCGCAAGA CGTCCGCGCC GAGCTTCAAC CTGATTCATG TCGCGGGGCG CGTCGGCGCG
GCCGACGACG GCCAGCCCGC GAAGGTATCG CACGCGGCGG GCGTCACGTC GCTGATCGCG
GTGTCGCTGT CCGACGACCT GCGCACGGGC CTGAACCTCG CGCAACTGCA GGCGGCGCTG
TCGAGCGCGA AGGCACGCGT CGACGCGGAC ATCGGCACGG TATTCCCGCG CATCACGCTG
AACGACGACG AGGGCGCGCC GGCCGGTACG TACCGGATCT ATCTGCAGGA CGTGCTCGTC
GCGCACGGCG CGCTGAAGCC GGGCTGGCTG CTGTGGGACG GCGTCGCGCC GCTGCCGGAG
CGCGCGGAGC GGCAGCCGGC CGAGGCGTTC GGCCCGTTCG CGACCGCGCT GTGGATCAAG
CCCGACGGCG CGGCACCGGA CGGCAAGTGG CTGTCGAGCG AGAGCGCGCT GGCCGCGCAC
GTCGAGCAGA TCGTGCGCCA GCATGCGGAC GAGCTGCTCG GCATCCAGGA GACGCAGGCG
CTCGTGCATC TGGTGCGCCG CGATCATCCG GAGCTGGTGG GCGAACTGAC GCGGCTCGTG
CCGCTGCAGC GCGTGACCGA AGTGCTGCGC CGGCTGCTCG CCGAACAGGT GCCGATCCGC
AACCTGCGCG TGATCTTCGA GAGCCTGATC ACGTGGGCGC CGAACGAGCC TGACGACGTG
ATCGCGCTGG TCGAGCTCGT GCGCGTCGAC CTGCGCCGGA TGATCACCGA TCGACACGCC
GGCACGGCGC GCCAGCTGCG GGTCGTGCTG TTCGAGCAGA ACCTGCAGGA GCGGATCGAG
AGCGCGGTGA TGCGCACGAA GCAGGGCAAT TTCCTCGCGC TGTCGAGCGC GGTCAAGCAG
GACATCGGCG AACAGGTGCG CGCGATCGTG CAGGCAGCTC AGGCGGCCCC CGGCGGCCAC
GGCAACGCGC CTGGTGGCGC GCACGGTGGC GCGCGGCTCG CGGTGATGGT CGCGCTCGGC
GCGCGCCGCT ACGTGAAGAC GATCCTGCAG CCGGTGCTGC CCGAACTCGC GGTGCTGTCG
TACCAGGAAG TCGAGGAGGA CGTGCAGTTG CATACGGTCG GCTGGGTGAA GAACCCGCCG
GACGACGGCA CGGTCGGCGC GGGCGCCGAC GTGCGGGCGC CGGGAGCCGT GCAATGA
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| Protein sequence | MAEPKALPRD WQRLFSAGRG VSGRRLGGAS PRADLFLATF IVAVVALFIL PLPQAALDGM
ISLNLAASVV LLTVSTYVPS AVSFSSFPAL LLFTTLFRLA LNIASCKLIL LHANAGHVID
AFGRLVVGNN VVVGGVVFLV IAVVQFIVIA KGSERVAEVG ARFSLDAMPG KQMSIDADLR
AGIISADEAR ERREKLEQES QMHGAMDGAM KFVKGDAIAG LVIAFINIVA GIAVGTLMHG
MDIGEALQRY AILTVGDGMA SQIPSLLVSI AAGIVTTRVA TRDARQRQLG EQLGEQLGAH
PRALLIAAFV LSGFLVVPGF PKWSFALIAL GLGAFAFSQL KRKTSAPSFN LIHVAGRVGA
ADDGQPAKVS HAAGVTSLIA VSLSDDLRTG LNLAQLQAAL SSAKARVDAD IGTVFPRITL
NDDEGAPAGT YRIYLQDVLV AHGALKPGWL LWDGVAPLPE RAERQPAEAF GPFATALWIK
PDGAAPDGKW LSSESALAAH VEQIVRQHAD ELLGIQETQA LVHLVRRDHP ELVGELTRLV
PLQRVTEVLR RLLAEQVPIR NLRVIFESLI TWAPNEPDDV IALVELVRVD LRRMITDRHA
GTARQLRVVL FEQNLQERIE SAVMRTKQGN FLALSSAVKQ DIGEQVRAIV QAAQAAPGGH
GNAPGGAHGG ARLAVMVALG ARRYVKTILQ PVLPELAVLS YQEVEEDVQL HTVGWVKNPP
DDGTVGAGAD VRAPGAVQ
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