Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_5259 |
Symbol | |
ID | 6128070 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010515 |
Strand | + |
Start bp | 2360402 |
End bp | 2362522 |
Gene Length | 2121 bp |
Protein Length | 706 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641652350 |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_001778878 |
Protein GI | 170737618 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTCG CTCCGAATGG GGGTATTCCC AGTGGATTGG GTGGTGGTGC GCTCGGCTCC CTGAGCGCGC TCGGCGGCCT CGCCGGCCCG GTGGCGTCGA GTGTGGCCGG CAGCCTCGGG CCGCTCGCGG GGCTGGCCGG GCACGTCGAC ACCGTCCAGC GCGCGCTGCA GCTCGCACAG ACCGGTTTCT CGCTGATGGA GAAGACGCCC GGCGCCATCG CCGAGGCGAT CAACGGCGCC GCCAACCCCG CGCGCCTGAC CCAGCTCAAT CGTTACGTCA CGCTCGATAC GCCGCTCGGC CCGGATGTGC TGCTGGTCAG CGCGGCCGTC GTCGACGAGC ACGTGAACCG CTTGCCGGAA ATCCATCTCG ACCTGCTGTC GCATCGCCAC GACCTGCGCC CGGAGGACCT GATCGGCCAG CAGGTCAAGA TCCGCTTCGA CCAGCAGGCG CGCCTGTCGA CGCTCGAACG CGTCGTGGCG GCGGGCGGCG GCGACAACGA CCGCTACTTC GACGGCTACG TCGCGTCGTT CGATCGCGCC GGCAACCCCG GCAACGTCAC GCAATACCAC CTGACGGCCG TGCCGTGGTT CTGGTTCCTG ACGCGCTCGA CCGACTGCCG GATCTTCCAG AACAAGACCG CGCAGGACAT CCTCACCGAG ATCTTCCAGG AACACGGGTT TTCCGATTTC ACGTTCGACA TCCGGACCAG CCAGAAGCCG CTCGAGTACG TCGTGATGTA CCAGGAGAGC TACTACAACT TCTGCGCGCG GCTGATGGAG CAGGAAGGGC TCATCTGGAC GCACCGCTAC GAGAAGGACA AGCACTTTCT CGTGATCGGC GACACGAACC TGCTGTTCCG CCCGATCGAC GGGCTCGCCA CCGTGCCGTT CGCCGCGACC GAGGCCAGCG AAGACAGCGG CATCGACCAG TTGCACGAAG GCCGGCGCTT CGGCGTCGGC AAGGTCACGT TCCGCGACTT CAATCATCAG AATCCGTCGT CGCCGCTGAT GCTGGTGGAG GCCGGCCCGC AAAACCTCAA GCACGCACGG CTCGACGCGA CCGAGCGGTT CGAGCACCAG TCGCTGTACG ACCACGGCGA CGACGGCAAC CGCTACGCCC GTTTCGCGAT GGAGGCCGAG GAGGCGCAAG CCCATCGCTA TACCGGCGGC GGCTACGCGT GGCGCATGAC CACGGCGGGC GCCGTGACCG TCGCGAATCA TCCCGTCCTC GAAAACAACC AGGAGTACGT GATCCTGCAC GTGCGTCACG AGGCCGTGAA CGACTATACG CAGCACAGCG CGAAGCTGCC GTACCGCAAC AGCTTCTCGC TGTTGCCGAA GAAGATTCCG TACCGTGCGC CGCGCGCGAC GCCGAAGCCG GTGATTCACG GCACGCAGTC GGCGATCGTC GTCGGGCCGA AGGGCGAGGA AATTCATACG AACGGCAGCG CGGTGAAAGT GCATTTCCCG TGGGATCGGC GCGGCAAGAA GGACGGCTCC GATTCGATGT GGGTGCGCGT GTCGCAACCG TGGGCGGGCG ACGGCTGGGG CGCGGCCGCG ATTCCGCGGA TCAAGCAGGA AGTGCTGGTG GCGTTCAATC AGGGTGATCC GGATAACCCC GTGATCGTCG GCCGCGTGTT CAACGGCGAG CAGGGCAACC CGTATCACGG CGCGGCCGGC CAGACGATGG GGATCAAGAG CCAGACGCAC AAGGGGCAGG GGTCGAACGA GTTGCTGATG AGCGACGTCA ATGGTGCGCA GATGCTCTAC ATGCATGCGC AGAAGGACAT GCATACCGTG GTCGAGGATG CGCAGTGGAC TCAGGTTCTC AAAGGCGACC GGACCGTCGA GGTGGGCAAG GGCAACCATA CGACGGCTAT CGCGGTTGGC AACCTGTCGG ACGTTGTCGT GCAGGGCAAT ACGCTGCATC AGACTCCGCA GGGTGTGCAC ACGCTGGAAG CCAAGGAACT CTGGATCAAG ATCGGCGGCG ACGGCGGCAC GCGGATCCAC ATGACAGCCG ACTCGATCGA CATCTACAAG GGCGAGTCGG TGATCCATCT GGATGACGGC AATATCAATA TCCAGGCTGC CCGGACCGAC ATCAACCCGA AGAACGGCTA A
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Protein sequence | MSFAPNGGIP SGLGGGALGS LSALGGLAGP VASSVAGSLG PLAGLAGHVD TVQRALQLAQ TGFSLMEKTP GAIAEAINGA ANPARLTQLN RYVTLDTPLG PDVLLVSAAV VDEHVNRLPE IHLDLLSHRH DLRPEDLIGQ QVKIRFDQQA RLSTLERVVA AGGGDNDRYF DGYVASFDRA GNPGNVTQYH LTAVPWFWFL TRSTDCRIFQ NKTAQDILTE IFQEHGFSDF TFDIRTSQKP LEYVVMYQES YYNFCARLME QEGLIWTHRY EKDKHFLVIG DTNLLFRPID GLATVPFAAT EASEDSGIDQ LHEGRRFGVG KVTFRDFNHQ NPSSPLMLVE AGPQNLKHAR LDATERFEHQ SLYDHGDDGN RYARFAMEAE EAQAHRYTGG GYAWRMTTAG AVTVANHPVL ENNQEYVILH VRHEAVNDYT QHSAKLPYRN SFSLLPKKIP YRAPRATPKP VIHGTQSAIV VGPKGEEIHT NGSAVKVHFP WDRRGKKDGS DSMWVRVSQP WAGDGWGAAA IPRIKQEVLV AFNQGDPDNP VIVGRVFNGE QGNPYHGAAG QTMGIKSQTH KGQGSNELLM SDVNGAQMLY MHAQKDMHTV VEDAQWTQVL KGDRTVEVGK GNHTTAIAVG NLSDVVVQGN TLHQTPQGVH TLEAKELWIK IGGDGGTRIH MTADSIDIYK GESVIHLDDG NINIQAARTD INPKNG
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