| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_4231 |
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| Symbol | |
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| ID | 6127062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia MC0-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010515 |
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| Strand | + |
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| Start bp | 1182340 |
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| End bp | 1183950 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641651337 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001777870 |
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| Protein GI | 170736610 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.308845 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATCA CGACGTACGA CATGCCTACT CTCGCCGACA TCCCGCATCT GCAAGACGAT
CACGACGATG CCGTTCAGGC CGTATCGACC GGCGCGGAAG CGGCGCCGGG AAGGCTCGAC
GAATCCGTCG CCGGCGCCAC GCAGATGCTG ATCGATCGCG GCGACGTCAC GCGTGCCGCC
GAGCTTACCG CCGAGCACTG GCGGATGCAT CCCGCGTCGC CGGCGGCGGC TTTCAATTGC
GGTTACGCAC TCCAGGTGGC CGGGCGTCAC GCCGATGCGA TCGTGCCGTA CCGCAAGGTG
CTCGACCTGG CACCCGCGTG GCCGTCGCTG AAGAACAATC TCGCGCTCGC GATCCGCATG
TCGGGCGGCG ACTCCGACGT GGAACACGCG CTCGTCGAAG GCGCGCTCGA CGACGATCCG
CACGACGCCC GGGCCTGGAC GAATGCGGTG ATCACGCGCC TCAACCGATT CGACCTGGAC
GGCGCGCAAC GCGCGGCCAC GCGTGCCGTG TGGCTCGCGC CGGACAGCCC ACGCGCGACG
AACAATGCGG CCGCCATGCT CAAGGAGGCG CAGCAGTGGG GCGACGCCGA GCGATATGCA
CTGCGCACCT GCGCGCTCGA TCCGCACGAT CCGACACACC GCTACAACCT GTCGCTGCTG
CGTCTCGCGC GCGGTGACTT CGCGTCGGGC TGGGCCGATT ACGAAGCCCG CTGGCGCGGC
GCGGGCGAGC TGCGCGGCAG GCTGCCCGTG TTTGCGCAGC CGCGCTGGCG CGGCGAGTCG
CTAGCAGGCA AAACGCTGCT CGTCTGGGGC GAACAAGGGC TCGGCGACGT GCTGCAGTTC
AGCCGCTACC TGCCGCTGCT CGCGGAGCGC GTGCATCGCG AAGGCGGACG CATCGTTTGG
AACGTATTTC CGGAATTGGG CGCCCTGATC GCGCGCAGTC TCGGCCATCA CATCGACGTC
CTCGACACCG GCGTCGGTAT CGAACACCTG CCGGACCACG ACTACGAACT GCCGCTGATG
AGCATTCCGT GGCGACTCGG CCTCGACGCC GACACGCTCG CCACGCCCGT GCCCTATCTC
CACGCGGATG TCGCGGCCAC CGACGCCTGG CGCAATGCGC TCGCCGGCGA ACGGCGGATG
AAGGTCGGCC TGGCATGGAC CGGCAGCCTC ACGCACCAGC GCAACCGCTT CCGCCGGGTC
GGGCTCGAGC GCTACGCAGA CGCGTTCGGC AACTTGCAGC AGGACGTCGC GTTCTACTCG
CTGCAGCCGG GTGCGCAGCA CGACATCGAG GCGGCGCGCG CGGCCGGCTT TGAAGTGGCG
GACATGACAC GCGAATGGAA GACGCTCGAC GACACCGCAG CGTTCATCGG CGCACTCGAT
CTCGTGATCA CCGTGTGCAC GTCGGTCGCG CACCTGAGCG GCGCGCTCGG CCAGTTCACG
TGGGTGCTGC TCGACGCGAA CCCGCACTGG GTCTGGCAGC ACGACCGGCG CGACAGCCTG
TTCTATCCGG GCGCGTCGCT GTACCGGCAA CGGACGTTCG CCGACTGGGG GCCCGTGCTC
GACGAGGCGG CGGCGGATCT TCGCGATCTC GCCGGCCGCG ACGTCGAATA G
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| Protein sequence | MQITTYDMPT LADIPHLQDD HDDAVQAVST GAEAAPGRLD ESVAGATQML IDRGDVTRAA
ELTAEHWRMH PASPAAAFNC GYALQVAGRH ADAIVPYRKV LDLAPAWPSL KNNLALAIRM
SGGDSDVEHA LVEGALDDDP HDARAWTNAV ITRLNRFDLD GAQRAATRAV WLAPDSPRAT
NNAAAMLKEA QQWGDAERYA LRTCALDPHD PTHRYNLSLL RLARGDFASG WADYEARWRG
AGELRGRLPV FAQPRWRGES LAGKTLLVWG EQGLGDVLQF SRYLPLLAER VHREGGRIVW
NVFPELGALI ARSLGHHIDV LDTGVGIEHL PDHDYELPLM SIPWRLGLDA DTLATPVPYL
HADVAATDAW RNALAGERRM KVGLAWTGSL THQRNRFRRV GLERYADAFG NLQQDVAFYS
LQPGAQHDIE AARAAGFEVA DMTREWKTLD DTAAFIGALD LVITVCTSVA HLSGALGQFT
WVLLDANPHW VWQHDRRDSL FYPGASLYRQ RTFADWGPVL DEAAADLRDL AGRDVE
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