| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_2128 |
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| Symbol | ligA |
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| ID | 6120098 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | - |
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| Start bp | 2233992 |
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| End bp | 2236505 |
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| Gene Length | 2514 bp |
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| Protein Length | 837 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641650069 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_001776615 |
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| Protein GI | 170731182 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.825717 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGATC CCGCCCTCAT GATCCCCCTG GATCCTGCCC AGCGTGCCGC TGAACTGCGT
CGTCGTCTTC AAGAGGCCAA CTACCACTAC CACGTCCTCG ACCAACCACG TATTCCGGAT
GCTGACTACG ACCGCATGTT GCGTGAACTG GACGCCCTCG AAGCGACCTA TCCAGACCTA
GCGACGCCTG ATTCACCGAC TCAGCGTGTT GGACACACCA TTGCCACCGC ATTTTCCGAA
GTGCGCCATA CCGTCCCGAT GCTTTCCCTG AACAATGCCT TCAGTGATCC CGAAGTCCTT
GAATTCGTGC GCCGTATTAC CGCGCGTCTG GGCGAAACAG CCCCTAGTTT TTCTGCAGAA
CCCAAACTGG ATGGCTTGGC GATCAGCCTC CGCTATCAGA ACGGCATCTT TATCCAAGGA
GCGACTCGCG GCGATGGCGT CACCGGCGAA GATGTCACCG CCAACCTGCG TACCCTGCCT
ACCATCCCGC AGCGCTTGCA AAGCGACACA TGGCCAACCG TGTTGGAAGT GCGCGGCGAA
GTTTATATGC CACGTCCTGA CTTTGAAGCC TACAACACCC AGGCCCGGCT TCGCGGATGG
AAAGTACTGG CCAATCCCCG CAATGGCGCC GCTGGCTCCT TGCGGCAACT GGACCCACAC
ATCACCGCAC AGCGCCCCCT GAGCTTCTAT GCCTACGGTA TCGGCGAAGT GGCCGATGAC
GTATCGTTCC ACAGCCACTC CGAAATCCTG GCCTCCCTAC GTGCCTGGGG ATTCCCCGTC
TCCCCCCTCG TGGAGCTGGT GTATGGCAGT GAAGGACTAC TGAATTACTA CCGCCGGATG
GAAACCATTC GCGATACCTT ACCGTTTGAT ATTGATGGCA TCGTTTATAA ACTCGACGAC
CTGTCTGGCC AGCATGAAAT GGGGTTTGTC GCCCGTGCCC CCCGTTGGGC CATTGCCCAT
AAATTTCCGG CCCAAGAACA AACCACCACT GTCGAAGCCA TTGAAATCCA GATTGGCCGC
ACCGGTGCGG CCACCCCAGT CGCACGCCTG ACCCCCGTAC AAGTCGCTGG AGTCACCGTT
ACCAGCGCCA CCTTGCATAA CGCTGACCAG ATCGCCCGCT TGGATGTACG CATCGGTGAT
ACCGTCATCG TGCGCCGTGC TGGTGACGTG ATTCCTGAAG TTGTCGCAGT CATCACCGAC
AGCCGCCCCC CTGGAGTCAC CGCATGGAGC ATGCCGATGG CGTGCCCCGT CTGTGGTTCC
GAGATTGTTC GTGAAACAGG CGCCGCTGTA TGGCGTTGCT CCGGTGAACT CGCCTGTCCC
GCACAACGCA AAGAGGCCAT CCGCCATTTC GTCTCCCGCC GCGCCATGGA TGTCGAAGGA
CTGGGCGTCA AGTGCATTGA ATTACTGGTG GATGCCGCCG TTGTCCACGG CGTCGCTGAC
CTGTATCACC TGAGCCTGGA TCAACTGCTG CGGCTCCGCC TCGTCACCAA TGCCCAGACC
CCCACCATGC TCCTGCGCGA AGCGCGCGAC CATGTGACCG GCATGCGTTA CCAACAATTA
GAAGAGATAC TGCGCACCGT GGGTGTGGAC CTGTCTGGTG AAGGTGACGT GCCCGAGCAT
TGGCAGATTG ACGTATTGCG TGCCCAATGG CCGGACTTTG ATTGGAACCA CAAAAAGATT
GCCACCAAGT GGGCGCAGAA CCTGATTGCT GCCATTGACC GCTCACGGCA GACTACCTTG
GAGCGTTTCC TCTTTGCCCT TGGCATGACC CATGTCGGCG AAACCACCGC CAAAGCACTG
GCGCACTCCT TCGGGGACTT AGCAATCATT CGGCAACTCC CCTGGCCCTT ATTCAAATGC
GTCCCGGATA TTGGAGGCGA AGTGGCACGT GCCATCGGCC ACTTTATGGA TCAGCCCGCC
AACCAACAGG CCATTGATGA CCTAGTGGAG CGTGGTGTGC GTATCACCGA TGCCCATCCC
CCCACATCTA CATTGCGCGA TCAACTCACC CTGGCTAGCC TCTTGGAACA CTTGGAGATT
CCAAAAATCA CCCCAATGCG TGCTGTCCAG TTAGCCACCC TCGCTCCCAC ATTGCCCTTA
TTGGCTGAAG CCGACCTTGA TGCACTCCTT CAGGCGGGCG TGCCCCAGCC TGCTGCACAA
TCATTGACCG AATGGTTCCA ATCTCCTGAT AACATCTCCT TAGCTCGCCG TCTCCAGCAC
TGCTGTGACG TACTGTTGGC ACAACTGCCA TCCCCCGATC GTGCCCACAC TGCCCCACTC
AACGGCCAGA GCGTCGTACT GACAGGCAAA TTAGCGTCAC TGACCCGTGA AGCCGCCGCC
ACTCGACTAG AAATGCTGGG AGCCAAAATT GTCGGCAGTG TGTCCAAAAA AACCAGCTTC
CTCGTTGCTG GAGAAGATCC AGGCTCCAAA CTCGACAAAG CCCACGCCTT GCATGTCGAT
ATTTGGGATG AAGCCCGTCT ACTGGACTTT CTGGAACAAT ACAGTGCCCA ATAG
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| Protein sequence | MTDPALMIPL DPAQRAAELR RRLQEANYHY HVLDQPRIPD ADYDRMLREL DALEATYPDL
ATPDSPTQRV GHTIATAFSE VRHTVPMLSL NNAFSDPEVL EFVRRITARL GETAPSFSAE
PKLDGLAISL RYQNGIFIQG ATRGDGVTGE DVTANLRTLP TIPQRLQSDT WPTVLEVRGE
VYMPRPDFEA YNTQARLRGW KVLANPRNGA AGSLRQLDPH ITAQRPLSFY AYGIGEVADD
VSFHSHSEIL ASLRAWGFPV SPLVELVYGS EGLLNYYRRM ETIRDTLPFD IDGIVYKLDD
LSGQHEMGFV ARAPRWAIAH KFPAQEQTTT VEAIEIQIGR TGAATPVARL TPVQVAGVTV
TSATLHNADQ IARLDVRIGD TVIVRRAGDV IPEVVAVITD SRPPGVTAWS MPMACPVCGS
EIVRETGAAV WRCSGELACP AQRKEAIRHF VSRRAMDVEG LGVKCIELLV DAAVVHGVAD
LYHLSLDQLL RLRLVTNAQT PTMLLREARD HVTGMRYQQL EEILRTVGVD LSGEGDVPEH
WQIDVLRAQW PDFDWNHKKI ATKWAQNLIA AIDRSRQTTL ERFLFALGMT HVGETTAKAL
AHSFGDLAII RQLPWPLFKC VPDIGGEVAR AIGHFMDQPA NQQAIDDLVE RGVRITDAHP
PTSTLRDQLT LASLLEHLEI PKITPMRAVQ LATLAPTLPL LAEADLDALL QAGVPQPAAQ
SLTEWFQSPD NISLARRLQH CCDVLLAQLP SPDRAHTAPL NGQSVVLTGK LASLTREAAA
TRLEMLGAKI VGSVSKKTSF LVAGEDPGSK LDKAHALHVD IWDEARLLDF LEQYSAQ
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