| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_1533 |
|---|
| Symbol | |
|---|
| ID | 6119974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 1597326 |
|---|
| End bp | 1598468 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641649521 |
|---|
| Product | GumH protein |
|---|
| Protein accession | YP_001776077 |
|---|
| Protein GI | 170730644 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.175349 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTGG TGCATGTTGT TCGTCAATTT CATCCGTCAA TTGGTGGGAT GGAGGATGTG
GTCTTCAATA TTGCGATGCA GCTACATTTG CATGCTGGAA TCGGTGTTGA TGTTGTGACG
TTGAACCGAG TATTTACTCA GTCTGATGTT CTACTTCCAT GTACTGATAA GTATCAGGGT
GTGTCGATCC AGCGCATTGG TTATCGTGGT TCTTCGCGTT ATCCATTGGC ACCAGGAGTA
TTGCGTATGT TGGATAAAGC CGATGTGATT CATGTGCACG GTATTGATTT TTTTTATGAT
TTCCTGGCAT TGACTCGGGT GTTACATGGA AAGCCAATGG TCGTTTCAAC GCATGGTGGT
TTCTTCCATA CGGATTATGC ATCAAGACTT AAATTACTTT GGTTCAATAC ATTGACTAGG
TTATCAGCGT TGGCTTATGC ACGGATTATT GCGAGTAGTG AGAGTGATGG TGCGTTGTTT
TCAAAGATCG TGGCGCCGAG TCGATTGCGA GTCATTGAAA ATGGCGTAGA TGTGGAGAAG
TATGCAAGGT GTGGTGCTTC GGAAGCTGGA CGCACTCTTT TGTATTTCGG GCGCTGGTCG
ATGAACAAGG GATTGTTGGA GACGTTGCAA TTACTGGCTG TATTGTATGT GTTAGATCCG
CGCTGGCGAT TAATTATTGC TGGACGTGAA TATGATTATG ATCAGGCTGC GTTGGTGTAT
GAGGTGGATA GGCTTGGGTT ATCTGAGCAG GTGGATTTTC ATTGTAGTCC GTCACAGTCG
CAGTTGCGCT TTTTAATGGA GCAAGCACAG TTTTTTATTT CACTGTCGCG GCATGAGGGT
TTTGGTATCG CTGCAGTTGA GGCGATGAGT GCTGGATTGA TTCCTGTCTT GAGTGATATT
CCACCATTTG CGCGTTTATA TCGTGAGTCC GGTTTAGGTG TTTTGGTCGA TCCATTACAA
CCACAGCAGG CTGCAGTTGC TGTACAGGGA TTGGCATTAC AGGTAGATAC TCATTTTATC
GACTGGCGAT CTCAAGCGAT GGCTTTCAGT GATCGTTATC ACTGGCGTTA TGTCATTGGT
TGTTATCAGG ATGAGTATTG TAGAGCACTT GGATTAAGTG GTGAGCAGGA ATTTCTGAGG
TGA
|
|---|
| Protein sequence | MKVVHVVRQF HPSIGGMEDV VFNIAMQLHL HAGIGVDVVT LNRVFTQSDV LLPCTDKYQG
VSIQRIGYRG SSRYPLAPGV LRMLDKADVI HVHGIDFFYD FLALTRVLHG KPMVVSTHGG
FFHTDYASRL KLLWFNTLTR LSALAYARII ASSESDGALF SKIVAPSRLR VIENGVDVEK
YARCGASEAG RTLLYFGRWS MNKGLLETLQ LLAVLYVLDP RWRLIIAGRE YDYDQAALVY
EVDRLGLSEQ VDFHCSPSQS QLRFLMEQAQ FFISLSRHEG FGIAAVEAMS AGLIPVLSDI
PPFARLYRES GLGVLVDPLQ PQQAAVAVQG LALQVDTHFI DWRSQAMAFS DRYHWRYVIG
CYQDEYCRAL GLSGEQEFLR
|
|---|
| |