| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0756 |
|---|
| Symbol | |
|---|
| ID | 6120518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 814232 |
|---|
| End bp | 815623 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641648812 |
|---|
| Product | RNA polymerase factor sigma-54 |
|---|
| Protein accession | YP_001775377 |
|---|
| Protein GI | 170729944 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATTGA AAGCAAGACT GCGAACATCC ATCGGACAAC AGCTGGTCAT GACACCCCAG
CTACACCAAA GCATCCGTCT GCTGCAAATG TCCAACGCCG AATTGCAACT GGAAATCACC
GCAGCGATAG AGAGCAATCC ACTCTTGGAC TGGGCCGAGA ACCAATCATC GGAGACCAGC
GAAGCTGCCG AAACGGAAGT AGAAACAGAA GATTGGCAGG CCAAGGAGTC GGCCTGGGAT
ATCAACGGCA GTAAAAGCAA CGAAAATGAC GACAACAACC CTGCTGAACG TCTGACCAAC
GAAAACACTC TCACTGATCA CTTGCTGTGG CAACTGCGCC TCTCTCCACT GTCAGCACGT
GATTACCAAA TAGGCACCGT CTTGATTGAT GCCATAGAAG AAGATGGTTA CCTGCGTGAA
CCTTTATCCA CACTGACTGC AACCATAACC CCGTTATCTG TAGATGAAAG CGAACTGCTA
CCAGTATTAC GACACATTCA ATCTTTTGAC CCGACCGGCG TAGCTGCACG CTCGCTGGCC
GAGTGCTTGA CGCTGCAACT GAAATCATTG AGAGAAGCGA TACCCGGACG CACACTTGCA
CTGCAGATTG TCAACAGCCC ACTGCTCGAA CAATTGCCCC GCAGTGGTGT CACCGGACTG
GCGCGCGAAC TGAAACGACC CTCCCAAGAC GTCCAACAGG CAGTGGAATT GATCCGTGGA
CTGGACCCTC GCCCAGGTAA GAAAATTGGC GACTTAGAAG TTGGAACCTA CGTTATACCG
GACTGTGTGA TCTGGCGCCA ACATGGGCTG TGGCAAGCTA CGCTGTTGGG ACATGGATTC
CCACAAGTCG TCCTACACCG CGGCTACGAA CAGCTCATCA ACCGCTGCAA TGACGCCAAT
GCGAGCTACC TACGCAACCA ACTCCAAGAA GCACGATGGC TGCTCAAGGG CCTGGAAGCA
CGCGGTGAAA CTTTGTTAAA GGTGGTAAAC AGCCTCATAC GTCACCAAGC GGGATTCTTG
GAATTCGGCC AGCACGCGTT ACGTCCATTG ACTATCCGCG AATTAGCAAC GGAACTTGCC
CTGCATGAAT CCACCGTATC CCGTGCAATT GCTGGCAAGT ATGTACGCAC CCCACGTGGC
ACCTTAGCGC TACGCACCTT TTTCGCTTCA GGAATCAGCA CCGACAACGG CGGAGAGACC
TCCAGCTCTG CCATTCAAGC AATCATCAGA CGTCTCATAG AAACTGAAAA CCCCCGCAAG
CCACTCTCTG ACGCCAAACT AGCTGAATTG CTGAAGACAT CCGGTATTCC AGTAGCGCGA
CGCACCATAG CAAAGTATCG TGATGCTATG AACATCTCCG CATCCCACGA ACGCGTCCGA
GTCCTAGGAT GA
|
|---|
| Protein sequence | MTLKARLRTS IGQQLVMTPQ LHQSIRLLQM SNAELQLEIT AAIESNPLLD WAENQSSETS
EAAETEVETE DWQAKESAWD INGSKSNEND DNNPAERLTN ENTLTDHLLW QLRLSPLSAR
DYQIGTVLID AIEEDGYLRE PLSTLTATIT PLSVDESELL PVLRHIQSFD PTGVAARSLA
ECLTLQLKSL REAIPGRTLA LQIVNSPLLE QLPRSGVTGL ARELKRPSQD VQQAVELIRG
LDPRPGKKIG DLEVGTYVIP DCVIWRQHGL WQATLLGHGF PQVVLHRGYE QLINRCNDAN
ASYLRNQLQE ARWLLKGLEA RGETLLKVVN SLIRHQAGFL EFGQHALRPL TIRELATELA
LHESTVSRAI AGKYVRTPRG TLALRTFFAS GISTDNGGET SSSAIQAIIR RLIETENPRK
PLSDAKLAEL LKTSGIPVAR RTIAKYRDAM NISASHERVR VLG
|
|---|
| |