| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_6349 |
|---|
| Symbol | |
|---|
| ID | 6125272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010512 |
|---|
| Strand | - |
|---|
| Start bp | 363305 |
|---|
| End bp | 366898 |
|---|
| Gene Length | 3594 bp |
|---|
| Protein Length | 1197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641647362 |
|---|
| Product | YadA domain-containing protein |
|---|
| Protein accession | YP_001773959 |
|---|
| Protein GI | 170734845 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport
[W] Extracellular structures |
|---|
| COG ID | [COG5295] Autotransporter adhesin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGGA AGCAGATTTC GGCGCTCGCC GCCGCGATGT TCACGGGTGC GGGTGTGCTG
ATCGCCGGCG GCGCCCACGC GGACAATTTC GTCGACCGCG GTAACCCCGA CAACGCGCTG
AACGGTCAGT GTATCGACGG CACCAACCCG CTATGCGTGG CAACGAAGAA CGGCAGTTAC
GTGGCAGTCA GCACCGCGAA CGTGACGCAG GGCACCAATG CGAAGGCCGG CACCAGCGGC
ATCGCGATCG GCGACCAGTC GAATGCGAGC AGCAAGGGCG GCACCAGCAG CGGCGGCGCG
ATCGCGATCG GCGTCGGCTC GCAGGCGCTG GCGAACTCGG CCACCGCGAT CGGCACGGTG
GCGGTCGCGC AGGGCAATAC GGCGCTGGCG ATCGGCCGTC AGTCGGCGGC GGTCGGCGAT
TTCTCGATGG CGCTCGGCAA CGTCGCGGAT GCGCACGGCA CGAGCTCGAT CGCGCTCGGC
CACTCGGCGC TCGCGAGCGG TGACCGCTCG GTCGCGATCG GCGGCGCGAA CCCGACGTCG
AGTGACGGCG TATCGGCCGG CGCGTCGTAT GACGCGGCGA CACAGACGCG TGCCGCCGGC
ACGCAGTCGG TGGCGATCGG CGCCGGCGCG CAGACGAACG ACAACAACCA GGTAGCGATC
GGCTCGGGCA GCGTCGGCGC GAACAACGGC GGCACGCCGG TGTTCGGCGG CACGGCCGCC
CCGGTCGGCG GCGCGGTGTC GTTCGGTGCG CTCGGCAGCG AACGCCAGCT CAAGAACGTC
GCGGCGGGCG CGGCCGATAC GGATGCCGTC AACGTCCAGC AACTGAAGAA CGTGAACAGT
ACGCTGAGCA CGGGCATCGG CAACGTCGAT GCACGCGTGA CGTCGGTCGG CAATTCGCTG
TCGACCACGA TCTCGAACGT CGACCAGCGC GTGACCAGCG TTGGCAACAG CTTGAGCACG
AGCATCGTCA CGGCCACCCG GAACGTCGTC AAATACACCG ACGACTCGCA TGCGGCGATC
GCGCTCGACG GCGCCGCCGG CACGACGATC GGCGGCGTGG CAGCGGGCGT GGCCGATACC
GACGCGGTCA ACGTCGGTCA GTTGAAGGGT AGCCTCACGC CGCTGCAAAC GTCCATTTCG
ACGGCTGCTT CGAACATCAC GAACCTGCAG AACAGCGTGA CCGGCATCAA CGGCTCGCTG
AGCACGGCGG CATCGAACAT CGCCGGCCTG CAGGCGGCCG ATACGCGCAA CGTCAAGTAC
GACGGCGTGA GCGGCTTCGA CTCGGTGACG TTCGCCGGCC CCAACGGCAC GACGCTGCAC
AACGTCGCGG ACGGCAAGGA CGCGCACGAC GCCGTGAACG TCGGCCAGTT GAACGGCGGC
CTTGCATCGC TCAGCACGAG CGTGACGAAT AACCTCAGCA CGACGCTCGG CAACCTGAGC
ACGTCGATCA CCAGCCAGAT CGGCAACGCG ACGAAGAACG CGGTGCAGTA CGACGACGAT
GCGCATGGCG GCGTCACGCT CGGCGGCAAG GGCGCAACGG CGCCGGTCGG CCTGCACAAC
GTTGCGGACG GCGTGGCGGC GGGCGATGCC GTGAACGTCG GCCAGCTCGG CAAGGCGACC
GACGCGCTCA ACCAGTCGAT CACGACCGTC GGCAACCAGG TGACGACGAA TACCGGCAAC
ATCGCGGCGC TCCAGCAGGA CGCGCTGCAA TGGAACCCGG GCCTCGGCGC CTACGATGCG
AGCCACGGCG GCCTTGGCCC GCAGCTGATC AGCAACGTCG CGGCCGGCAA GAGCGGCACC
GACGCGGTCA ACGTCGACCA ACTGAACGCG GCGATTCACG ACGGCACAAG CCAGCTCGAC
GCGCTCGCCG TGAAATACGA CGATGCGAGC AAGCAGCAGG TATCGCTCGG TGCAGGCAAC
GGCGGCAATC CGGTGCGCGT GACCAACGTC GCGGCAGGCA ACGTCGCGGC CGGCAGTACC
GACGCGGTGA ACGGCGCGCA ACTGCGGCGC GCGACCGACG GCACCGCGGC CGCGCTCGGC
GGCGGCGCGA CGGCGAACCC GGATGGCTCG ATCGGCGCAC CGAACTACAA GATCGGCGGC
AGTGCGTTCA ACAACGTCGG CGACGCGCTG ACGAACCTCG ACGGCCGGGT CGGCAGCAAC
ACGACGACGC TCGCGAATCA CGAAACGCGC ATCGACAATG CCGAAACGAA TATCGCGGGC
AACACGGCGG CGATCGCCGG GCTGCAACAG GATGCACTGC AATTCGACCC GACGCTCGGC
GCGTTCAACG CCGCGCGCGG CGGTGCACCG ACGAAGCTGA CGAACGTGGC CGACGGCAAC
GTCGCCGCGG GCAGCACGGA TGCGGTCAAC GGCGGCCAGT TGTCCGGCGT GAAGACCGCA
CTCGAACAGC AGATCACCAA CGTGTCGAAC CAGGCCGGCG AAGCGGTGAA GAACCTCGTC
AAGTACGACG TCGACGCGAG CGGCAACCGG CTGAATTCGG TGTCGCTCGT CGGCGGCGAC
GCCACGTCGG CGGTCGTGCT GAAGAACGTC GCGGCGGGCA CCAGCGATAC CGACGCGGTG
AACGTGAAGC AGTTGAAGGA CGTGCAGTCG AACCTGAACC AGCTCGGCGC GCTCGCGGTG
CAGTACGACG ACAGCTCGAA GAGCACGATC ACGCTCGGCG GCGCGGGCGG CACGCGCATC
ACCAACGTGC AGGCCGGCAC GCTGAGCGCC ACCAGCACCG ACGCGGTGAA CGGCTCGCAG
CTCTATGCGA CCAACCAGCA GGTGTCGAAG AACACCACCG ACATTTCCAA CCTGCAAGGC
AGCGTGACCA ACATCGCGAA CGGCAAGGCT GGCCTCGTGC AGCAGCAGGA CCCGAACGGC
GCGATCACGG TCGGCAAGGA TTCGGGCGGC ACCAGCGTGA ACTTCTCCGG CACGGCGGGC
GACCGCGTGC TGACCGGCGT CGCGGCGGGC GTGAACGCGA ACGACGCGGT CAACGTGGGC
CAGTTCAACG CCGCGCTGCA GAACGTCGCG GCCAACGACA AGATCCGCGC GGCCGCGACC
GATGCGAACA CCACGTGGAT CGCGCGTGCC GATGCGGGCG CGATCGGCTC GACGGCGACC
GCAACCGGCA AGAACGCGGT GGCCGTTGGC CAGGGCTCCG TGGCCGATCG CGACAACTCG
TTCTCGGTCG GCGCGAAGGG CAGCGAGCGC CAGATCACGA ACGTCGCGGC CGGCACGGCG
CCGACCGACG CGGTGAACGT GCAGCAGCTG AACGACAACC TTGCGACGGC GTCGACGCAG
GCGAAGGGGT ATACCGACCA GCGCATCGGG CAGGTGTACA ACTCGTTCAA CGACCTGAAG
AAGGACATGT ACGGCGGTGT CGCGTCGGCG ATGGCGGTGG CTGGCTTGCC GCAGCCGACC
GGCGCGGGGC GCTCGATGGT GTCGGCGGCG ACGTCGAACT ATCACGGCCA GCAGGGCTTC
GCGGCCGGCT ACTCGTACGT GACGGAGAGC AACCGCTGGG TCGTCAAGGC ATCGGTGACG
GGCAACACGC GCTCGGACTT CGGCGCGGTG GTCGGCGCGG GTTATCAGTT CTGA
|
|---|
| Protein sequence | MKRKQISALA AAMFTGAGVL IAGGAHADNF VDRGNPDNAL NGQCIDGTNP LCVATKNGSY
VAVSTANVTQ GTNAKAGTSG IAIGDQSNAS SKGGTSSGGA IAIGVGSQAL ANSATAIGTV
AVAQGNTALA IGRQSAAVGD FSMALGNVAD AHGTSSIALG HSALASGDRS VAIGGANPTS
SDGVSAGASY DAATQTRAAG TQSVAIGAGA QTNDNNQVAI GSGSVGANNG GTPVFGGTAA
PVGGAVSFGA LGSERQLKNV AAGAADTDAV NVQQLKNVNS TLSTGIGNVD ARVTSVGNSL
STTISNVDQR VTSVGNSLST SIVTATRNVV KYTDDSHAAI ALDGAAGTTI GGVAAGVADT
DAVNVGQLKG SLTPLQTSIS TAASNITNLQ NSVTGINGSL STAASNIAGL QAADTRNVKY
DGVSGFDSVT FAGPNGTTLH NVADGKDAHD AVNVGQLNGG LASLSTSVTN NLSTTLGNLS
TSITSQIGNA TKNAVQYDDD AHGGVTLGGK GATAPVGLHN VADGVAAGDA VNVGQLGKAT
DALNQSITTV GNQVTTNTGN IAALQQDALQ WNPGLGAYDA SHGGLGPQLI SNVAAGKSGT
DAVNVDQLNA AIHDGTSQLD ALAVKYDDAS KQQVSLGAGN GGNPVRVTNV AAGNVAAGST
DAVNGAQLRR ATDGTAAALG GGATANPDGS IGAPNYKIGG SAFNNVGDAL TNLDGRVGSN
TTTLANHETR IDNAETNIAG NTAAIAGLQQ DALQFDPTLG AFNAARGGAP TKLTNVADGN
VAAGSTDAVN GGQLSGVKTA LEQQITNVSN QAGEAVKNLV KYDVDASGNR LNSVSLVGGD
ATSAVVLKNV AAGTSDTDAV NVKQLKDVQS NLNQLGALAV QYDDSSKSTI TLGGAGGTRI
TNVQAGTLSA TSTDAVNGSQ LYATNQQVSK NTTDISNLQG SVTNIANGKA GLVQQQDPNG
AITVGKDSGG TSVNFSGTAG DRVLTGVAAG VNANDAVNVG QFNAALQNVA ANDKIRAAAT
DANTTWIARA DAGAIGSTAT ATGKNAVAVG QGSVADRDNS FSVGAKGSER QITNVAAGTA
PTDAVNVQQL NDNLATASTQ AKGYTDQRIG QVYNSFNDLK KDMYGGVASA MAVAGLPQPT
GAGRSMVSAA TSNYHGQQGF AAGYSYVTES NRWVVKASVT GNTRSDFGAV VGAGYQF
|
|---|
| |