| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_0501 |
|---|
| Symbol | |
|---|
| ID | 6129242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium sp. 4-46 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010511 |
|---|
| Strand | - |
|---|
| Start bp | 593518 |
|---|
| End bp | 596814 |
|---|
| Gene Length | 3297 bp |
|---|
| Protein Length | 1098 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 79% |
|---|
| IMG OID | 641640823 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001767498 |
|---|
| Protein GI | 170738843 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00159333 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGTGAAGC GTCAGCCGCG CGCCGCGCGC CGCGCGGAGA TCGTGGCGCC GGCCCTCCCC
GACGGCGCCC TCGCGGAGGC GCTCCTGAGC CTGAGCGCGG CGGCATCGCC CCTCGTGCTG
GTGGCCCGGG ACGCGCGGCG CCTCGACGGG ATCGCCGCGA TCCTGCGGGC GCTCGCCCCC
GGGCTCGGCG TGGCCGTCTA TCCCGCCTGG GATTGCCTGC CGGGCGACCG CACCTCGCCC
TCGCGGGGCG CCATGGGCGC GCGGGCGGGG GTGCTGCGCT GGCTCTCCGA GCCGGCTCCT
CCCGCCATCG TCCTGACGAC CGCGCCCGCC CTGATCCAGC GCGTGCCGCC GCCCGAGACC
TGGGCGCAGG CCCGCGTCCT CCTGCGGGTG GGCGAGCAGG TGGAGGCCGA GGCGCTGGAG
GCGGCCCTGA CGCGCCTCGG CTACATCCCC GACGAGCGGG TCGACGAGCC GGGCGAGATC
GCCCTGCGCG GCCGCACCTT CGAGGTCTTC CCGGCCGCCG CCCCCGTCCC GTGCCGCGTC
GAGCACGAGG ACGGGCACAT CACGGCGATC CGCTCCTACG ATCCGGTCAC CCAGCGCTCG
CTCGGCGAGG CGGCCGAGCT GCTGATCGAC CCGGCGACCG AGCTCATCCT CGGTCCCGAT
TCCCCCGAGC CGCTGCGGCC CTTCACCGGG CAGGAGCACC GCCTTCCCGC CTTCTACCCG
CGCCTCGCGA CGCTCCTCGA CCCGGTGCCG GGCGCCCGCC TCGTGGTCGA GGCCGGGGCG
GAGGCGCGGG CCGAGGCCTT CTTCGAGCAG CTGGCGGAGG CGGGCGGCGC GCGGGCGGGC
GCGGGGCTCT ACCTCGCGCC GGAGGAGTGG CGGGCGCTCC TCGGGCGGCG CCGGATCGCC
ACGGCCCTGC CGTCCGAGGA CCGGGCGGTG CCGGCCTTCG CCCGCGAGCG CCGCCCCGCC
GCCGCCTTCG GGCGCTTCCT CGCCGCGCGG TGCGAGGCGG GCGACCGCGT CATCCTGGCC
GGGCCCGGCC GCGCGCTGGG GCGCCTCGCC CGCGAGGCCG TGGACCAGCT CGGGCACAAG
CTCCTGCGGG CGCGCGACTG GGCCGCCGCG CTCCGGGCCG AGCCCGGCCG CGTGGCGGTG
CTGGAGGCGC CGATCGCCGA GGGGTTCCGG GTGCCGGACC ACGCCCTCAC GGTGATCGCC
GCGGCCGACC TGCTCGGCAA GCGGGCCGCG CCCGCCTGGG CCGCGCCCGC CCGGGCCGCG
CCCGGCCGGG AGGGCGCCCC CGCCGCGCTG CCCTTCGCCG ATCCCGACCT GCATCGCGGC
GACGTCGTCA TCCACGAGGA TCACGGGCTC TGCGTCTTCG AGGGGCTGGA GCTCCTGCGC
GGGCCCGAGG GCGGGGGCGG GGAGGCGGCG CGGCTGCGCT TCGCCGACGA CGCGGTGCGG
CTCGCCCCCC TCTCGGAGGC CGGCCGGATC TGGCGCTACG GCGCCGCCGC CGAGGCGGTG
ACGCTCGACC GCCTCGACGG CGGCAACCTC CCCGGCGGTA CCTGGGCGAC GCGCCGCGCC
GGCGTGGAGG CGGCCGTCGC CGAGAGCGCG CGGCGCATGC TCGCCCTCGC CGAGGCGCGC
CGGCGCGCGA CGGCTCCCGC CCTCGTCCCG CCGGAGCGCC AGATGGAGCG GTTCGGCGCC
GGGTTCGGCT TCCCGCCGAC CCCGGACCAA GCGGCCGCGA TCGACGCCGT GATGGCGGAC
CTCGCCGCCG GCCGCCCGAT GGACCGCCTT GTCTGCGGCG ATGTCGGCTT CGGCAAGACC
GAGGTCGCCC TGCGCGCCGC CGCCGCGGCC CTGTTCGCCG GCAAGCAGGT GGCGGTGGCG
GCACCCACGA CCGTGCTGGT GCGCCAGCAC GTCGAGACCT TCCGGCGCCG CTTCGCCCGC
TTCGGGATCG TCCCGGCCCA GCTCTCGCGC CTCGTGCCGC CCGCCGAGGC CAAGCGGGTG
AGGGCCGGCC TGGCGGATGG GAGCGTGCGC CTCGTGATCG GCACGCACGC GCTTGCCGGG
CGCGGCCTCG TCTACGCCGA TCTCGGCCTC GTCGTCATCG ACGAGGAGCA GCGCTTCGGC
GCGGCCCAGA AGGCGCGGCT GCGCCGCGCC GCGTCCGGCG CGCACGTCCT CACCCTCACG
GCGACGCCGA TCCCGCGCAC CCTGCAATCG GCCCTGGTCG GGCTCCAGGA CCTGAGCGTG
ATCGCGACGC CGCCGGTGGT GCGCCGGCCG ATCCGCACGG TGGTCGCGCC CTTCGACCCC
GAGACGGTGC GGGCCGCGCT CACCCGCGAG CACCGCCGGG GCGGCCAGAG CTTCGTGGTC
TGCCCGCGCA TCGCCGACCT CGCCCCGATG GAGGCGCGGC TGCGCGCCAT CGTGCCGGAC
CTCAGCCTCG CCGTCGCCCA CGGCGAGATG CCGCCGGCCG CGATGGACGA GGCGATGGTG
CGGTTCGCGG AAGGGGAGGG GGACGTGCTC CTGGCCACCA ACATCATCGA GAGCGGGCTC
GACGTGCCGC GCGCCAACAC GATGCTGGTC TGGCACCCGG AGCGCTTCGG GCTGGCGCAG
CTCCACCAGC TGCGCGGGCG GGTGGGGCGC GGCCAGCGCC GGGCGGCGGC CTACCTGCTC
ACCGACCCGG AGGCGCCGCC CCCGCCGGCG AGCGAGGCGC GCCTGCGCGC CCTGACGGCC
CTGGACCGGC TCGGCGCCGG CTTCGCGCTG AGCGCCCGCG ACCTCGACCT GCGCGGGGCG
GGGGACCTGT TCGGCGAGGA GCAGGCCGGG CACGTCAAGC TGATCGGGCT CGGCCTCTAC
CGCGACCTCC TGGAGCGGGC GATCCGCGCC GCCCGCGGCG AGCCGCCCGA GGCGGCGCCG
GCCGAGATCC GCCTCGGCCT CGCGGGGGCG ATCCCGGCCG CCTACCTGCC CGAGCCGGAG
CTGCGCTTCG GCCTCGCGGC CCGGATCGCG CGGCTGCGCT CCCCCGAGGA GGCGGAAGCC
CTGCGCGACG AGATCGAGGA CCGCTTCGGC CCGCTGCCGC CGGAGACCGA GACGCTGCTG
ACCCTGGCCG GCCTGCGGAT GGCCTGCCGC GACCTCGGCA TCGCGCAGCT CGGCGCCGGC
CCGCAGGGCC TCGCGGCGGA TTTCCATCCG GGCCGCGCCG CGGCGGTGGC GCGGGCGATC
GCCGAGGTGG AGCGCCGGGG AGACCGGCTG ATCCTGCACC GGCCCTGCGC GGACCCGGTC
GCCTGCGGGC GGCTGGCGCG GCGCTTCGTG CGGGCGCTGG AGGCGGCGCA GGGGTGA
|
|---|
| Protein sequence | MVKRQPRAAR RAEIVAPALP DGALAEALLS LSAAASPLVL VARDARRLDG IAAILRALAP
GLGVAVYPAW DCLPGDRTSP SRGAMGARAG VLRWLSEPAP PAIVLTTAPA LIQRVPPPET
WAQARVLLRV GEQVEAEALE AALTRLGYIP DERVDEPGEI ALRGRTFEVF PAAAPVPCRV
EHEDGHITAI RSYDPVTQRS LGEAAELLID PATELILGPD SPEPLRPFTG QEHRLPAFYP
RLATLLDPVP GARLVVEAGA EARAEAFFEQ LAEAGGARAG AGLYLAPEEW RALLGRRRIA
TALPSEDRAV PAFARERRPA AAFGRFLAAR CEAGDRVILA GPGRALGRLA REAVDQLGHK
LLRARDWAAA LRAEPGRVAV LEAPIAEGFR VPDHALTVIA AADLLGKRAA PAWAAPARAA
PGREGAPAAL PFADPDLHRG DVVIHEDHGL CVFEGLELLR GPEGGGGEAA RLRFADDAVR
LAPLSEAGRI WRYGAAAEAV TLDRLDGGNL PGGTWATRRA GVEAAVAESA RRMLALAEAR
RRATAPALVP PERQMERFGA GFGFPPTPDQ AAAIDAVMAD LAAGRPMDRL VCGDVGFGKT
EVALRAAAAA LFAGKQVAVA APTTVLVRQH VETFRRRFAR FGIVPAQLSR LVPPAEAKRV
RAGLADGSVR LVIGTHALAG RGLVYADLGL VVIDEEQRFG AAQKARLRRA ASGAHVLTLT
ATPIPRTLQS ALVGLQDLSV IATPPVVRRP IRTVVAPFDP ETVRAALTRE HRRGGQSFVV
CPRIADLAPM EARLRAIVPD LSLAVAHGEM PPAAMDEAMV RFAEGEGDVL LATNIIESGL
DVPRANTMLV WHPERFGLAQ LHQLRGRVGR GQRRAAAYLL TDPEAPPPPA SEARLRALTA
LDRLGAGFAL SARDLDLRGA GDLFGEEQAG HVKLIGLGLY RDLLERAIRA ARGEPPEAAP
AEIRLGLAGA IPAAYLPEPE LRFGLAARIA RLRSPEEAEA LRDEIEDRFG PLPPETETLL
TLAGLRMACR DLGIAQLGAG PQGLAADFHP GRAAAVARAI AEVERRGDRL ILHRPCADPV
ACGRLARRFV RALEAAQG
|
|---|
| |