Gene Bcenmc03_0987 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcenmc03_0987 
Symbol 
ID6122667 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia MC0-3 
KingdomBacteria 
Replicon accessionNC_010508 
Strand
Start bp1090482 
End bp1092317 
Gene Length1836 bp 
Protein Length611 aa 
Translation table11 
GC content72% 
IMG OID641637557 
ProductTPR repeat-containing protein 
Protein accessionYP_001764286 
Protein GI170732339 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.384547 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0740288 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTCCG CATTCGACCA GGCGTACGCC GCGCACCGTG CCGGCCGCCT CGCCGAGGCC 
GAGCACGGTT ATCGCAACGC GCTCGCCTCC AACCCCGCCG ATGCCGACGC GCTGCACCTG
TTCGGCGTGC TGCGGCACCA GCAGGGCCAG CACGCCGAGG CGGCCGATCT CGTCGGCCGC
GCCGTCGCGC TGCGTCCGGA CGACGCCGCG TTGCAGCTCA ATCTCGGCAA CGCGCTGAAA
GCGCTCGGCC GGCTCGACGA AGCGATCGAC CGCTTTCGCA ACGCGCTGAC GCTCGCGCCC
GAATTTCCGC TCGCGCACTA CAACCTCGGC AACGCGTATG CGGCACTGCA GCGTCACGAC
GATGCGATCG ACGCCTTCGG CCGTGCGCTG CGGCTCACGC CCGACGACGC GTCGATCCAC
AACAATCTCG GCAACGCGCT GAACGCGCTC GGCCGCCACG ACGACGCGCT CGCCGCGTTC
GGTCGCGCGC TTGAACTCCG GCCCGGCCAT GCGGGCGCGC ACAACAACCT CGCGATGGCG
CTGAGCGCGA TGGGTCGCGC CGACGATGCG ATCGCGCACT TCCAGGCCGC GATCGCCGCG
CAGCCGCGGT TCGTCGCCGC GCATTTCAAT CTCGGCAACA CGCTCGATGC GGTCGGCCGG
CATGCCGAGG CAGCCGCGGC ATTCGAAGCC GCGCTCGCGC TGCACCCGCC GTTTCCGCTC
GCGCTGTTCG GGCTCGCGAA CGCGCTCTGC GCGCAGGCGC GCCACCGCGA CGCACTGCCC
TACTACGAGC GCGCCGTCGG GCTCGATCCT TCGTTCGGGC TCGCATGGCT GAATCTCGGC
AACGCGCATC ACGCGCTCGG CGCGCACGAG ATGGCGCTGC GCGCATTCGA CCAGGCGCTG
CGGGTCGCGC CCGATCTCAC GCTCGCGCGG CTGCACCGTG CGGTCACGCT GCTGACGCTG
CGCGACTTCA CGCGCGGCCT GCCCGCCTAC GAAGCGCGCC ACGAGACGCC CGGCGCGACG
CCGCTCGGCG CGCTGCCGCG CTGGCAGGGC GAGCCGATCG CGTCGCGCAC GCTGATGATC
CGCGCGGAAC AAGGGTTCGG CGACACGCTG CAGTTCGTTC GCTTCGTGCC GCTGGCCCGC
GCACGCTGCG CGCGCGTCGT GCTCGAAGTC CAGCCGGAAC TCGTCGCGCT GCTGACGCCG
GCCGCGTCGC GCTGGCGCGT GACGCTCGTC CCGCAGGGCG CCGCGAAGCC GCCTGCCGCG
GACGTCGCGT GCACGCTGAT GAGCCTGCCG TTCCTGCTCG GGCTGCAGCC GGATGACATC
GTCGGCTCGC GCTACCTCGA CGCACCCGAC GGCGCCCGTC GGCGCTTTCG CGGTTCGCTC
GGCGGGCAAT CGAAGCGCAA GTTCGGCCTG GCATGGTCGG GGCGCCGGCA GGCGCAGGAA
AACCGCTCGA TGCCGTTCGA CGCGCTCGCG CCGCTCCTCG CACTGCCGGA CATCGACTGG
ATCGTGCTGC AGCCCGCGCT AGACGACGAC GAACGGGCGC GCGTCGACGC GCATCCGCGC
GTGCATCGTC TCGACGGCCG GCTGAACGAC TTTGCCGATA CGGCCGCGCT GATCGAGCGC
CTGGACGGCG TCGTCACGAT CGACACCGCG GTCGCGCACC TCGCGGGCGC GCTCGGCAAG
CCGCTGTGGG TCATGCTGCC GTTCGCGGCC GACTGGCGCT GGTTCACCGG CGACGACTGC
CCGTGGTATC CGCGAGCCAG GATCGCCCGC CAGCCTGCGC CGGGCGCGTG GCTCGACGTG
GCGGCCTCAG TGGCCGACAT GCTGCGCGAC GCATGA
 
Protein sequence
MDSAFDQAYA AHRAGRLAEA EHGYRNALAS NPADADALHL FGVLRHQQGQ HAEAADLVGR 
AVALRPDDAA LQLNLGNALK ALGRLDEAID RFRNALTLAP EFPLAHYNLG NAYAALQRHD
DAIDAFGRAL RLTPDDASIH NNLGNALNAL GRHDDALAAF GRALELRPGH AGAHNNLAMA
LSAMGRADDA IAHFQAAIAA QPRFVAAHFN LGNTLDAVGR HAEAAAAFEA ALALHPPFPL
ALFGLANALC AQARHRDALP YYERAVGLDP SFGLAWLNLG NAHHALGAHE MALRAFDQAL
RVAPDLTLAR LHRAVTLLTL RDFTRGLPAY EARHETPGAT PLGALPRWQG EPIASRTLMI
RAEQGFGDTL QFVRFVPLAR ARCARVVLEV QPELVALLTP AASRWRVTLV PQGAAKPPAA
DVACTLMSLP FLLGLQPDDI VGSRYLDAPD GARRRFRGSL GGQSKRKFGL AWSGRRQAQE
NRSMPFDALA PLLALPDIDW IVLQPALDDD ERARVDAHPR VHRLDGRLND FADTAALIER
LDGVVTIDTA VAHLAGALGK PLWVMLPFAA DWRWFTGDDC PWYPRARIAR QPAPGAWLDV
AASVADMLRD A