Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_0987 |
Symbol | |
ID | 6122667 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010508 |
Strand | - |
Start bp | 1090482 |
End bp | 1092317 |
Gene Length | 1836 bp |
Protein Length | 611 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641637557 |
Product | TPR repeat-containing protein |
Protein accession | YP_001764286 |
Protein GI | 170732339 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.384547 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0740288 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTCCG CATTCGACCA GGCGTACGCC GCGCACCGTG CCGGCCGCCT CGCCGAGGCC GAGCACGGTT ATCGCAACGC GCTCGCCTCC AACCCCGCCG ATGCCGACGC GCTGCACCTG TTCGGCGTGC TGCGGCACCA GCAGGGCCAG CACGCCGAGG CGGCCGATCT CGTCGGCCGC GCCGTCGCGC TGCGTCCGGA CGACGCCGCG TTGCAGCTCA ATCTCGGCAA CGCGCTGAAA GCGCTCGGCC GGCTCGACGA AGCGATCGAC CGCTTTCGCA ACGCGCTGAC GCTCGCGCCC GAATTTCCGC TCGCGCACTA CAACCTCGGC AACGCGTATG CGGCACTGCA GCGTCACGAC GATGCGATCG ACGCCTTCGG CCGTGCGCTG CGGCTCACGC CCGACGACGC GTCGATCCAC AACAATCTCG GCAACGCGCT GAACGCGCTC GGCCGCCACG ACGACGCGCT CGCCGCGTTC GGTCGCGCGC TTGAACTCCG GCCCGGCCAT GCGGGCGCGC ACAACAACCT CGCGATGGCG CTGAGCGCGA TGGGTCGCGC CGACGATGCG ATCGCGCACT TCCAGGCCGC GATCGCCGCG CAGCCGCGGT TCGTCGCCGC GCATTTCAAT CTCGGCAACA CGCTCGATGC GGTCGGCCGG CATGCCGAGG CAGCCGCGGC ATTCGAAGCC GCGCTCGCGC TGCACCCGCC GTTTCCGCTC GCGCTGTTCG GGCTCGCGAA CGCGCTCTGC GCGCAGGCGC GCCACCGCGA CGCACTGCCC TACTACGAGC GCGCCGTCGG GCTCGATCCT TCGTTCGGGC TCGCATGGCT GAATCTCGGC AACGCGCATC ACGCGCTCGG CGCGCACGAG ATGGCGCTGC GCGCATTCGA CCAGGCGCTG CGGGTCGCGC CCGATCTCAC GCTCGCGCGG CTGCACCGTG CGGTCACGCT GCTGACGCTG CGCGACTTCA CGCGCGGCCT GCCCGCCTAC GAAGCGCGCC ACGAGACGCC CGGCGCGACG CCGCTCGGCG CGCTGCCGCG CTGGCAGGGC GAGCCGATCG CGTCGCGCAC GCTGATGATC CGCGCGGAAC AAGGGTTCGG CGACACGCTG CAGTTCGTTC GCTTCGTGCC GCTGGCCCGC GCACGCTGCG CGCGCGTCGT GCTCGAAGTC CAGCCGGAAC TCGTCGCGCT GCTGACGCCG GCCGCGTCGC GCTGGCGCGT GACGCTCGTC CCGCAGGGCG CCGCGAAGCC GCCTGCCGCG GACGTCGCGT GCACGCTGAT GAGCCTGCCG TTCCTGCTCG GGCTGCAGCC GGATGACATC GTCGGCTCGC GCTACCTCGA CGCACCCGAC GGCGCCCGTC GGCGCTTTCG CGGTTCGCTC GGCGGGCAAT CGAAGCGCAA GTTCGGCCTG GCATGGTCGG GGCGCCGGCA GGCGCAGGAA AACCGCTCGA TGCCGTTCGA CGCGCTCGCG CCGCTCCTCG CACTGCCGGA CATCGACTGG ATCGTGCTGC AGCCCGCGCT AGACGACGAC GAACGGGCGC GCGTCGACGC GCATCCGCGC GTGCATCGTC TCGACGGCCG GCTGAACGAC TTTGCCGATA CGGCCGCGCT GATCGAGCGC CTGGACGGCG TCGTCACGAT CGACACCGCG GTCGCGCACC TCGCGGGCGC GCTCGGCAAG CCGCTGTGGG TCATGCTGCC GTTCGCGGCC GACTGGCGCT GGTTCACCGG CGACGACTGC CCGTGGTATC CGCGAGCCAG GATCGCCCGC CAGCCTGCGC CGGGCGCGTG GCTCGACGTG GCGGCCTCAG TGGCCGACAT GCTGCGCGAC GCATGA
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Protein sequence | MDSAFDQAYA AHRAGRLAEA EHGYRNALAS NPADADALHL FGVLRHQQGQ HAEAADLVGR AVALRPDDAA LQLNLGNALK ALGRLDEAID RFRNALTLAP EFPLAHYNLG NAYAALQRHD DAIDAFGRAL RLTPDDASIH NNLGNALNAL GRHDDALAAF GRALELRPGH AGAHNNLAMA LSAMGRADDA IAHFQAAIAA QPRFVAAHFN LGNTLDAVGR HAEAAAAFEA ALALHPPFPL ALFGLANALC AQARHRDALP YYERAVGLDP SFGLAWLNLG NAHHALGAHE MALRAFDQAL RVAPDLTLAR LHRAVTLLTL RDFTRGLPAY EARHETPGAT PLGALPRWQG EPIASRTLMI RAEQGFGDTL QFVRFVPLAR ARCARVVLEV QPELVALLTP AASRWRVTLV PQGAAKPPAA DVACTLMSLP FLLGLQPDDI VGSRYLDAPD GARRRFRGSL GGQSKRKFGL AWSGRRQAQE NRSMPFDALA PLLALPDIDW IVLQPALDDD ERARVDAHPR VHRLDGRLND FADTAALIER LDGVVTIDTA VAHLAGALGK PLWVMLPFAA DWRWFTGDDC PWYPRARIAR QPAPGAWLDV AASVADMLRD A
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