| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4912 |
|---|
| Symbol | |
|---|
| ID | 6119293 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5905960 |
|---|
| End bp | 5906601 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641636497 |
|---|
| Product | lysine exporter protein LysE/YggA |
|---|
| Protein accession | YP_001763256 |
|---|
| Protein GI | 170729230 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.15938 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGATC TCGCTCTACT CCCTCTCTAT ATCACAACCG TTATAGCGCT ACTTTTGATC
CCTGGCCCTG ACATGTTGTT AATCGCCAGT TCAAGCCTTA GTTATGGCAA AAAAGTAGGT
CTTTATGCCA GTCTTGGCAA TGCCACCTCA GGATTACTGC TCACCCTGTT AGCGGCAATG
GGAGTTTCAG CCTTAATCGC CATGAACCCG ATGGCACTGC AGCTACTGCG CATATTAGGC
GGCGCTTATC TATTAAAGAT GGGCTGGGAT TGCATGCGTG CTGGGCCTAT TGATGCTCCC
GAGGTGGCTC AGGATAATAA TTTAGCTAAA ATTCTCTATC GCCGCGCCGT ATTCAGCAAT
CTGCTCAACC CTAAGGCCCT GCTGTTTTTT GTGCTGTTTC TGCCCCAATT CGTGTCGGCA
GAGTTAACGG CCAGCTCAGG CGAACAGATG CTGGCATTGG GTCTACTGCT AAATGTGATG
GGATTACTGT TTAATCTCTT GCTGGTGGGC ATGGTGGGAA GCTTAGGAAA ACCGCTACTG
AAAAATGAGA AGTTTAGAGC CAATCAGAAC AAGTTTATGG GACTGATCTT CTTCACCTTA
GCCATCTGGT TACTGGCCTC TCAAGTACAG ACCATGAGCT AA
|
|---|
| Protein sequence | MIDLALLPLY ITTVIALLLI PGPDMLLIAS SSLSYGKKVG LYASLGNATS GLLLTLLAAM
GVSALIAMNP MALQLLRILG GAYLLKMGWD CMRAGPIDAP EVAQDNNLAK ILYRRAVFSN
LLNPKALLFF VLFLPQFVSA ELTASSGEQM LALGLLLNVM GLLFNLLLVG MVGSLGKPLL
KNEKFRANQN KFMGLIFFTL AIWLLASQVQ TMS
|
|---|
| |