| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4768 |
|---|
| Symbol | |
|---|
| ID | 6119145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5757990 |
|---|
| End bp | 5759078 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641636349 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001763112 |
|---|
| Protein GI | 170729086 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000176985 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCC TTATCCCAAC CCTACTGTGC TTTACACTTC TCTCTCCATA CACTGTGATG
GCAGAAGAAG AAAAACAGGA GACGCCACCT CGTCTGGTTA GCGTCGTTCA AGTGGAAAAT
CGAGCACTAT CACCAAAAAT CATGGTAATA GGTTCAGTCC ACTCAAGAAA CAGCGCCGAG
CTGACCTCTG GCATAGACGG TAAACTCGAC TGGGTACAAG AGGCTGGCAC CTTAGTCAAA
GCCGGCGAGG TCGTAGCTAG ACTAGAACAG ACCAGATTGA TACTGCAAAA AGAGCAACAA
CAAGCTCAAA TTGAGTATGA ACAGGTGAGC TTAAAGCGTC TGGAACGTGA ATACAGCAGA
CTTAAAAAGC TAATAAAAAG CAAAAATGCC TCAGAAACAG AGTTAGATAA GGCGCAATCC
GATCGCGATC TTGCCGCAGC AAATCTGAAA CTCGAACAGA TAAAGCTAAA GATGATCTTA
GACAACCTCG ATAGAACTGA AGTCAAAGCC ACTTTTGATG GCATTATCAC CGAGCGTCAA
CATCAAGCTG GAGAGGATAT TAGTCGCTCT GAATCAATCA TCGCCATGAC AGATCCCGAC
AATTTAGAGA TCCGTCTACA TGCACCACTA AAACACAGTA AGCGAGTCAA GAAGGGCGAT
GAACTCAATA TCTATCATAG CCAAGGCGAG TTCCACGGTA ATATTCGCAG TCTTATTCCC
GTATCTGACG TACGCTCACA GACTTTCGAA GCACGTATCG ATCTCCCAAT CGAGATGCAT
GATGCCTTCA GTGTCGGCGA GCTTGTTTCA CTCGCCCTGC CTATCGCACC TAAACAGCTC
ACCACTTTAG TGCCAAGAGA TGCCATCATT TTAAGATCCA CTGGCGCCTT TGTATTTAAA
ATCGATCTCG AGAATAAAGC GGTGAAGATC CCCGTAGAGC TTGGTGATGG CGAAGGAGAG
TGGATTGCAG TAAACGGTCA ACTCACCGAC AGTGACTCTG TGGTTATCCG CGGCGCTGAA
ACACTACAAG ATGGCCAAGT CGTCCAGTTT CAAGCAATCC CAGGAAGTAA GGTCGCAACG
GCAGGCTAA
|
|---|
| Protein sequence | MKTLIPTLLC FTLLSPYTVM AEEEKQETPP RLVSVVQVEN RALSPKIMVI GSVHSRNSAE
LTSGIDGKLD WVQEAGTLVK AGEVVARLEQ TRLILQKEQQ QAQIEYEQVS LKRLEREYSR
LKKLIKSKNA SETELDKAQS DRDLAAANLK LEQIKLKMIL DNLDRTEVKA TFDGIITERQ
HQAGEDISRS ESIIAMTDPD NLEIRLHAPL KHSKRVKKGD ELNIYHSQGE FHGNIRSLIP
VSDVRSQTFE ARIDLPIEMH DAFSVGELVS LALPIAPKQL TTLVPRDAII LRSTGAFVFK
IDLENKAVKI PVELGDGEGE WIAVNGQLTD SDSVVIRGAE TLQDGQVVQF QAIPGSKVAT
AG
|
|---|
| |