| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4407 |
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| Symbol | |
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| ID | 6118762 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5342098 |
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| End bp | 5342562 |
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| Gene Length | 465 bp |
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| Protein Length | 154 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641635969 |
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| Product | MSHA pilin protein MshC |
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| Protein accession | YP_001762754 |
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| Protein GI | 170728728 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.318857 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCATAGAG AGACAGGCTT TACCTTGGTA GAGTTAGTGA CCACTATTAT TTTGATAGCC
ATACTCTCTG TGGTGGTGCT ACCGCGCATG TTAACAAATT CGAGCTACAG TGCTTTTACT
CTTCGTGATG AGTTTATTAG TGAGCTTCGA AAGGCCCAGT TATTGGCGAT GAATAATCAA
GGTCGCTGTT ATCGGGTTGC CGTCGATCCC CAAGGTTATC AACTCCAAAG ATTTAGCAAT
TTAGCCTGCA CTACAGTTAC AGCGCCAACT GAGTCAAAAC GTCAATTTGA AGGAGGGGCT
AACCTCACAC TGATTAGTAG TGCCAGTAGT AGTTTCAACG TTGATTTTAG TGGAGACAGC
GACGGCGTGA GCAGCCTTGC GTGTTCTGGT GCCTGCATAA ACGTGATTGC CGATGAAACG
CTGACTATTA GTATTGAAAG TCAGGGGTAT ATTCATGGCC GCTAA
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| Protein sequence | MHRETGFTLV ELVTTIILIA ILSVVVLPRM LTNSSYSAFT LRDEFISELR KAQLLAMNNQ
GRCYRVAVDP QGYQLQRFSN LACTTVTAPT ESKRQFEGGA NLTLISSASS SFNVDFSGDS
DGVSSLACSG ACINVIADET LTISIESQGY IHGR
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