| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4329 |
|---|
| Symbol | |
|---|
| ID | 6118684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5243106 |
|---|
| End bp | 5244068 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641635892 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001762677 |
|---|
| Protein GI | 170728651 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.406414 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACATG ACCAAAGCGC AATGAACGAA CTCCACTGGC TGATCGATAT GGTTCAGACC
ATTGAGGTCG GCTTAGTCGT CCTTGATAAG AACTTTAATA TCCAGCTTTG GAACGGATTT
ATGGAGAACC ACAGCGGCGT CTCTCCTAAC TCCATTAAAG ATAAAAACCT GTTCGAACAG
TTCGACGATC TCCCATCCAC TTGGCTAAAA CAGAAGATGG AATCGGTATT TCTTCTTAAA
AACCGAGCCT TTATTAGCTG GGAGCAGCGT CCATACATCT TTAAGTTTAA GAACTACCGC
CCTATCACAG GCCGAGCAGA CTTCATGTAC CAAAATGTCA CCCTGCTCCC ACTCTCATCA
CTGACGGGTC AGATCACCCA TATCAGTATG ATCGTCTATG ATGTTACCGA TGTGGCTATC
AATAGATTGC AGCTCAAGGG CGCCAATGAG CGTTTAGAGT ACTTAAGTCA GACCGATGGA
CTCACCCAGC TGCATAATCG TCGTCATTGG CAACAGTGCA TGCAGAGAGA GTTTGACAGG
CATGCTCGAT ACGGCGATGA AACCAGCTTA GTTATGTTTG ATATCGATGA CTTTAAGAAA
GTAAATGACA ACTATGGCCA TACTATTGGC GATAAAGTGA TTCAACATAT CTCTCATCTC
CTAAAGCAAT CTTTACGAGA AACCGATTGT GCTGGCCGTT ACGGTGGTGA AGAGTTCTCT
GTGGTACTTG CTAAAACTTC AGCAACAGAT GCACTTCAAT TTGCAGAACG ACTGAGGAAG
AAGATAGAGG AGACCGCGCT CGTCTATGAA GATCAAACCA TTAATGTCAC GGTCAGCATC
GGAATATGCG ATATTCAAGA TGAGTTAGAG AACAGCGGCC AGTGGCTTAA TTGTGCCGAT
GAAGCCCTCT ATACCGCCAA GGATACAGGC CGAAATAAAT GCGTTATCTA TAAGCAGAAA
TAA
|
|---|
| Protein sequence | MSHDQSAMNE LHWLIDMVQT IEVGLVVLDK NFNIQLWNGF MENHSGVSPN SIKDKNLFEQ
FDDLPSTWLK QKMESVFLLK NRAFISWEQR PYIFKFKNYR PITGRADFMY QNVTLLPLSS
LTGQITHISM IVYDVTDVAI NRLQLKGANE RLEYLSQTDG LTQLHNRRHW QQCMQREFDR
HARYGDETSL VMFDIDDFKK VNDNYGHTIG DKVIQHISHL LKQSLRETDC AGRYGGEEFS
VVLAKTSATD ALQFAERLRK KIEETALVYE DQTINVTVSI GICDIQDELE NSGQWLNCAD
EALYTAKDTG RNKCVIYKQK
|
|---|
| |