| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4252 |
|---|
| Symbol | |
|---|
| ID | 6118607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5151418 |
|---|
| End bp | 5152104 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641635818 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_001762603 |
|---|
| Protein GI | 170728577 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.542635 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000142406 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTAA CACAACTACT TATTGTCGAA GATAACCCCG ATGTCGCAGG TATTCTGGCT
GACTTTTTTG AGTCTAAAGG AGCCGTGGTC GATTTTGCTA CTAACGGTGA GCTCGGCTAT
AAACTCGCAC TCGAAGGCAG TTTTGATCTG ATTATTTTAG ACCTGATGTT GCCCAAGATG
GACGGATTAA CTGTGGCTAA GCAACTTAGG CATATGGGGT GCAACACCCC AGTGCTGATG
TTAACAGCAC TCAATGATAA GCAAGATCTG CTAAAAGGCT TTGCCAGCGG CGCCGATGAC
TATCTGGCCA AACCCTTCGA TTTGGACGAA CTAAATGCTA GGGTAACCGC CTTAATTAAC
AGGCATCATG GCAAAGTCGC TCGAGGCGTA CTTAAGTTTG GCTCACTAGA GCTCGATATC
GCAAAGCATG AGGTTTACCG TAGCGGTAAA AAGCTCGCCC TCACGCCAAC TTGCTACCAA
ATCTTGCACC ATCTCATGCA TAAGGCCCCC AATATCGTGA AGCGAGAGGA ACTTATCGAG
GCTTTATGGA GCGATACACC ACCAAGTAAT GACATTCTAC GTAGCCATAT GTATCAACTG
CGCAACCAGT TAGATAAACC CTTTGATAGC CCGATACTAA CCACAGTGCC TAAAATAGGG
TTTAAACTTG AATTAACGAG CAACTGA
|
|---|
| Protein sequence | MALTQLLIVE DNPDVAGILA DFFESKGAVV DFATNGELGY KLALEGSFDL IILDLMLPKM
DGLTVAKQLR HMGCNTPVLM LTALNDKQDL LKGFASGADD YLAKPFDLDE LNARVTALIN
RHHGKVARGV LKFGSLELDI AKHEVYRSGK KLALTPTCYQ ILHHLMHKAP NIVKREELIE
ALWSDTPPSN DILRSHMYQL RNQLDKPFDS PILTTVPKIG FKLELTSN
|
|---|
| |