| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4074 |
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| Symbol | |
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| ID | 6118424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4945171 |
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| End bp | 4946433 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641635635 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001762425 |
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| Protein GI | 170728399 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCAGG ATACTAGCGG ACAGGACACT GTGGTACAGG CAAGCAAAGC TAGCAGGCTT
AAGTGGCCTT TAATTGCAAC TGCCGCAGCA CTTTTGGTTT CAGGTCTGGT TTGGTCAAGT
GTTGGTGGCA GTAATGTCAG TGAGTCGATT AGTCGTAGTG ACTTAAGATT TGCGACCTTA
GAGCAGGGGA CTTTAACGCG GGATATTGCC ACCACAGGTA AAATTGTCGC GGCCAATGCG
CCAATCCTCT ACAGCACTGA TCAAGGTACG GTGACGTTAC TGGCAAAACC CGGTGATAAA
GTTGAGTTAG GGGATGTGGT GGCAACTATC GAAAGCCATC AGTTAACGAA CAGTCTTAAG
CAGCAGGAAG CCTTGCTTGA GGGGATGCAG AGCTCATTGG AGCGTGCCCG TCTTGACGCT
CGTCGAGAGC AGTTAAAAGC GCAGCAGACT CTCGATATGG CTAAGGTCGA CCTTGAGGCC
GCAGACAGAG AGAGTCGTCG TGGTGATGAG TTAATTGAGA ATAAACTTAT CTCAAAGATC
GATTTCGAGA AGGGTAAAGA TGATCTGCAT AAGGCCAAGT TACTATCTGC CCATGCACAG
CAAGAAGCTG AGTTGACTCG CGATACCTTA GCGTTTGAGA TTAAAAATAA GGCTTCAGAG
GTTAACCGTC AGAAGTTAGT GGTGAGTGAG CTTGAGCGTC AAGTTGCAGC ACTGAATATT
AAAGCACCGG TTGGCGGCAT TATCGGTAAC TGGTTAACAG AGCAGAAAGC GCGTATTGGT
CAGAGTCAAC CTATCTTAAC TGTGGTGGAT TTAAGTGCTT TTGAAGCTGA GTTAGCGGTA
CCAGAATCTT ACGCTGATGA ACTTGGTTTA GGCATGGATG TTGAGTTGAA ATTTGGTGAA
CTGACCTTGA TGGGGGAGCT CTCCTCTATC TCTCCTGAGG TAAGAAATCG TGAGGTTACT
GCCCGTGTCC GTTTTGAGCA AGATGACCGT TTGCACCTTC GTCAAAATCA AAGATTATCA
GCACGAGTAT TACTCGAAAA TAGACCTAAC GTTTTGATGG TGAAGCGTGG GGCATTTGTA
TCAACCGGTG GTGGTCGAGA GGTGTACACC ATGAATGGCG ATATCGCTGA GCAGACAGAG
ATCCAACTGG GGGCCCGCAG CATGAGCCAT ATCGAGGTAC TACAGGGTGG TAAGGCTGGC
GATATATGGG TCATTTCAAG CGTTCAGCCC TTCAATCAAG CTCAGCAAGT TTTGGTTCGC
TAA
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| Protein sequence | MIQDTSGQDT VVQASKASRL KWPLIATAAA LLVSGLVWSS VGGSNVSESI SRSDLRFATL
EQGTLTRDIA TTGKIVAANA PILYSTDQGT VTLLAKPGDK VELGDVVATI ESHQLTNSLK
QQEALLEGMQ SSLERARLDA RREQLKAQQT LDMAKVDLEA ADRESRRGDE LIENKLISKI
DFEKGKDDLH KAKLLSAHAQ QEAELTRDTL AFEIKNKASE VNRQKLVVSE LERQVAALNI
KAPVGGIIGN WLTEQKARIG QSQPILTVVD LSAFEAELAV PESYADELGL GMDVELKFGE
LTLMGELSSI SPEVRNREVT ARVRFEQDDR LHLRQNQRLS ARVLLENRPN VLMVKRGAFV
STGGGREVYT MNGDIAEQTE IQLGARSMSH IEVLQGGKAG DIWVISSVQP FNQAQQVLVR
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