| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3993 |
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| Symbol | |
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| ID | 6118343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4861005 |
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| End bp | 4862465 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641635555 |
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| Product | Fis family transcriptional regulator |
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| Protein accession | YP_001762345 |
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| Protein GI | 170728319 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000527576 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.307332 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCAAAA CCAAAGCTCA AGTAGTATCG CTTCAATCTG AATTCCTGCC CGAAAATCAA
CTTATCCTAA ATGCGGTAAG TGAGGGGATA TATGGGTTTA ACTTAGCGGG AAATGCGGTC
TTTATTAATC CGGCAGCCGA GCGGATGACA GGCTGGAAAG CCGAAGAGCT ATTAGGCAAG
AATATCCATA ATTGTCATCA CCATAGCCAT AGCGATGGCA GTCACTACCC TAAAGAAGAC
TGCCCTATCT ATAACACGCT CAATGATGGT ATTGCCCGTG AGATTAGCCA TGAAGTATTT
TGGCGCAAGG ATGGATCTAG CTTCCCTGTG CATTACACCT CGACCCCTGT TTATAAAGAT
GGGAAGATGA TGGGTGTAGT CGCGATATTT CGTGACATCA GTATTCAGAA ACAAACAGAA
AAGTCTCTCA GAGAAGCCCT AGAGCAGGTT CAAGCCCTTT CTGAAACCCT CTCCTCTGAG
AATCAATACC TCCAATTAGA GCTAGCGGAT AGAACAGGAG ATGTGGGGAT CTCCGGTAAT
AGTCCTAAAA TAAAACAGTT AATTCAGCAA ATTAAACTCG TTGCCAATAC CGAAAGTACC
GTGCTTATCA GTGGCGAGAA TGGCACAGGT AAAGAGTTGG TCGCCCGTAA CTTACATAAA
CTAAGTAAAC GTGCAGATAA GCCTCTGGTC TGTGTTAACT GCGCCGCTTT CTCAGCTGGT
TTACTGGAGA GTGAACTTTT TGGTCATGAA AAAGGCGCCT ATACAGGGGC AACAAATCGG
CGTAAAGGTC GATTTGAGCT AGCCAATAAA GGGACTCTGT TTCTGGATGA GGTCGCCGAG
TTAAGCCTTG AAGCTCAATC TAAGCTGCTT AGGGTCATTC AGGAGCAGGA GTTTGAGCGG
GTTGGTAGTA GTGAGACCAT TAAAGTCGAT ATAAGGCTTA TCACCGCCAC TCATCACGAC
CTTCTAAAAC GAGTTGAGCA AGGCCTGTTT CGTATGGATC TCTATTATCG TCTCAATGTC
TTCCCAATTC AGGTTCCCGC TCTAAGGGAT AGACTCAGTG ACATACCTGA GCTAGTGAGC
CACTTAATTC AGGATTTGAA TAGGAAATTG GGCAAAAAGA TCACCCGAGT CAGTCAACAA
GGGTTGAAAA AGTTGATGCT ACACACCTGG CCGGGTAACG TTCGTGAGCT TCAAAATGTG
CTCGAACGAG AAACCATACT CTCACAAAGC CCTGTGCTTA AACTCGCGCA ACTACCAGCC
ATTCAGGCTC CCCAACAGAA GCAAAGTTCA AATTCAACCA ATCAGACCTT AGCTGAGATG
GAGAAAAAAC ATATCACTCG CGTGTTGCAG CAAACAAAAT GGCGGATCTC AGGCGCGTTA
GGTGCAGCAT CAGCTTTAGG CTTACCCCCT AGCACACTCA GATCTCGCAT GAAAAAACTG
AATATTGAGC GACCTCTATA A
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| Protein sequence | MAKTKAQVVS LQSEFLPENQ LILNAVSEGI YGFNLAGNAV FINPAAERMT GWKAEELLGK
NIHNCHHHSH SDGSHYPKED CPIYNTLNDG IAREISHEVF WRKDGSSFPV HYTSTPVYKD
GKMMGVVAIF RDISIQKQTE KSLREALEQV QALSETLSSE NQYLQLELAD RTGDVGISGN
SPKIKQLIQQ IKLVANTEST VLISGENGTG KELVARNLHK LSKRADKPLV CVNCAAFSAG
LLESELFGHE KGAYTGATNR RKGRFELANK GTLFLDEVAE LSLEAQSKLL RVIQEQEFER
VGSSETIKVD IRLITATHHD LLKRVEQGLF RMDLYYRLNV FPIQVPALRD RLSDIPELVS
HLIQDLNRKL GKKITRVSQQ GLKKLMLHTW PGNVRELQNV LERETILSQS PVLKLAQLPA
IQAPQQKQSS NSTNQTLAEM EKKHITRVLQ QTKWRISGAL GAASALGLPP STLRSRMKKL
NIERPL
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