| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3966 |
|---|
| Symbol | |
|---|
| ID | 6118315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4832281 |
|---|
| End bp | 4834668 |
|---|
| Gene Length | 2388 bp |
|---|
| Protein Length | 795 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641635527 |
|---|
| Product | phospholipase/carboxylesterase |
|---|
| Protein accession | YP_001762318 |
|---|
| Protein GI | 170728292 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3509] Poly(3-hydroxybutyrate) depolymerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAACA AGGTAACTTT TCCCCTGAAC TGTATTGCGC TTATCTTGGC AAGCCAACTT
ACTGGCTGTG GTAGCGATGG TGATAACGAT AGCAGTACCC CAACCGACAG TGCCCCACCA
GTAATTACTC TCGTTGGTAA CGAAAGTATC GAAGTTGTGT ATAACGCCGT ATTTGGTGAC
TTGGGTGCAG AAGCTCATGA TGATACAGAT GGTTCAATCA CCGTAACAAC GCAAGGAACC
GTCGATACCA GTATGCCTGG TACCTATGAG CTGACTTATA TTGCAACAGA TGCCAGTGGT
AACTCGTCTC AAGCTACCAG AACAGTGGTG GTGCTAGAGG ATACCTCGCA AAGCGCAACC
ATTACCACGC CAGGCGCACC GTTTTCATTC TTTTATGATG GTGTTTTGAA AGGTGCAGAT
TATTGGTCCG AAGAGCCACA AATCTTGTCG GCGGGCATGG GCTTTGATGG CATTGTCGCA
ATTGATGCTC CAGAGTTAAC GATTGATTCT GTCCTTGCGG CGGGTGGTGC TTGGTCATCA
GACATTGATT GTGGTACGGG CGCTCAAAAC TACACTGCAA CTTCAACTCG CGATCAAGTT
TCTGGGGCTT ATATTATTCA GACTCCTTAT GGGGAACTAA AAGACGACGC TATCGGTCTC
GATGGTTTGC CCATTGTGCT TAGTTGGCCG ATTGATACCC GTACTCTAAG TCTCACGGAT
TTTCAATTTA CATTAAACAC TGGTGACATT GTAAGGCCGT TGGCTATAGG CCCCTTACCT
AACTTTGAAG ACAATGAGCG AAATACACCG GTAGCTTTTG GAGAATTTGG CAACAGGTTA
CCAAGCGACC ATCCTGATGC TCGCTTCCCG ATAAAGCTTG AAATTGTTGA AGATGACACG
CCATTGATGA TGGTTGGCCC AGGCGGTCAA GTCGTCAGTG CCGTAGGGCT TACCTGGGAA
ACCGATTCCA GTCCGTATGA TGAGAATAAC GGTCCAAGAT TAGTCGGTGC GAAGTTAAAT
CGCATCGAGG GACAGATGGA TGGAGAAGGG ATCAGTACAC TACAACCATT AATTCCAGCA
AATGACGCCA CAGTCTTATA CGATGAAGGT GATTTCATGC TGAGAATGTT AACATCTGGT
GGTTTTTCAC CAGATGGTGT AAGTGGTCTA AAACCTAACG AATTTGAACG TTTCTTTCGA
ATTCACGCAA ATGGGTTGGA CGGCAACACG GTCATTATCG ATAAAGTCGG AGAGGAATAT
GCTGTGCAGG GGGGCACGCT TAGAGTGGTT GGTTTGTCAG ATCTAGGTCA GCCTGAAATT
GGCGAAGTTA CATTTGATGC TTGTTACAGT GAAGACAGGG ATAACTATAT CGACATCATT
TTGGTTGGCG ATGAAGAAGC AGCGAGAAAC ATTACCATAC TTGAAATCCC AAGTTTAGAA
GAAGGTTATT CAGCATTTTA TAACCCAGGT GGTCCAGGTA GCACCCCTTT CGAAGGCGTG
AGTTACTCAG CCCCTGGCCC ACGCGATCTT GAGCCGGTGA TCATTGCCTT AGATGATCCA
ATGCGTGTGA CTTACGTCCC AGGATCTGAG AACGTTGAAG CGCCTGATAA CCTAATGACT
TTCCAATTTG AAGGTATTGA ACGCGAATAT TTGTTGAATG TGTCTAGCAA TTATACGGGC
GATGTACCCG TGCCTTTATT GTTTGATTTT CATGGATTAA ACAGCGCAGC AGAAGTGCAA
TATAGTGACA GTCAGTTCAA TCAGATTTCC GAAACTGAGA ACTTCATATT AGTCACTCCG
CAAGCGATTA ATGGCTGGAA TGTGACTGGA TTTCCGCTAG GTGGTAATGC CAATGATCTG
GGCTTCATTG ATGCCTTAAT TGCGCAGCTA TCAACAGCGT ATAACATCGA TACCAATCGT
ATTTATGCGG CGGGCTTTTC ATTAGGCGGC TTCTTTTCCT TTGAATTGGC TTGCCAGTAT
AGCGACACAT TTGCGGCAAT CGCCCCGGTT TCCGGTGTGA TGACACCAGC TATGGCTGCC
GACTGCGTAC CAGAGCGTCC AATCCCAATA CTGCAAACTC ATGGCACCGC AGACGATCAA
CTTCCTTATG CACAAGCTCA AACTGTCTTG CAGTGGTGGA TTAACTTTAA TCAAACGGAT
TTGGAACCTG TCATCACTGA TTTAGAGGAC AGATTCCCTG AGAATGGCAC CACGGTACAG
CGTTATGTGT ACGGCAATGG AGACAACGGT GTATCTGTTG AGCATTTAAG AATTGAAGGT
GGTCAGCATA TATGGCCTGG GTCTGCGGGA GACAGCGATA CTAATATAGC AGAAGAAATA
TGGTCTTTTT TTGAAAGCTA TGATCTGAAT GGAAAAATTA ATGATTGA
|
|---|
| Protein sequence | MINKVTFPLN CIALILASQL TGCGSDGDND SSTPTDSAPP VITLVGNESI EVVYNAVFGD
LGAEAHDDTD GSITVTTQGT VDTSMPGTYE LTYIATDASG NSSQATRTVV VLEDTSQSAT
ITTPGAPFSF FYDGVLKGAD YWSEEPQILS AGMGFDGIVA IDAPELTIDS VLAAGGAWSS
DIDCGTGAQN YTATSTRDQV SGAYIIQTPY GELKDDAIGL DGLPIVLSWP IDTRTLSLTD
FQFTLNTGDI VRPLAIGPLP NFEDNERNTP VAFGEFGNRL PSDHPDARFP IKLEIVEDDT
PLMMVGPGGQ VVSAVGLTWE TDSSPYDENN GPRLVGAKLN RIEGQMDGEG ISTLQPLIPA
NDATVLYDEG DFMLRMLTSG GFSPDGVSGL KPNEFERFFR IHANGLDGNT VIIDKVGEEY
AVQGGTLRVV GLSDLGQPEI GEVTFDACYS EDRDNYIDII LVGDEEAARN ITILEIPSLE
EGYSAFYNPG GPGSTPFEGV SYSAPGPRDL EPVIIALDDP MRVTYVPGSE NVEAPDNLMT
FQFEGIEREY LLNVSSNYTG DVPVPLLFDF HGLNSAAEVQ YSDSQFNQIS ETENFILVTP
QAINGWNVTG FPLGGNANDL GFIDALIAQL STAYNIDTNR IYAAGFSLGG FFSFELACQY
SDTFAAIAPV SGVMTPAMAA DCVPERPIPI LQTHGTADDQ LPYAQAQTVL QWWINFNQTD
LEPVITDLED RFPENGTTVQ RYVYGNGDNG VSVEHLRIEG GQHIWPGSAG DSDTNIAEEI
WSFFESYDLN GKIND
|
|---|
| |