Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3915 |
Symbol | |
ID | 6118264 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 4773091 |
End bp | 4775232 |
Gene Length | 2142 bp |
Protein Length | 713 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641635477 |
Product | PKD domain-containing protein |
Protein accession | YP_001762268 |
Protein GI | 170728242 |
COG category | [R] General function prediction only |
COG ID | [COG3291] FOG: PKD repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAATATT CATATCGCAG CTTATATGGA GTGATAGCCT TATTGTTATT TTCCTCTCAA TCTCTAGCAG AGGACAATGA GGTTAAGGTA CTAGATGTTC GCTTTCTAGT TGCCGCAGCA GATAAACAGG GAACAGACGC GCAGGCCGAT GGGGAGACAC TAAGAGAGGG GATCGAAAAG TTAAACTTGT ACTACCAACC AATGGGCGTG CAGTTTAATC ATAAAGATAC GGTTTATATT ACCAACGAAG ATGTGCCGGG TTTCCATGAT CCAGAAGATG GGTGGGACAC AGATGATGAG GAGCTAGTCA GACCCTTCTT TGACCTCAAT AGCTACAACA TACTCGTGAC CGAGCTCAAA CGTCTTAATG GTCACGCCTG GTGGCCCTAT GAAGCAACGG ATGCTGTAGA GGTCGATCCA GAAGATCTTA TCTACTCCAC TACGGCCCAT GAGATAGGCC ATAACCTCAG CATCAGACAC ACATACTCAA GTAACAGTGA TGGCCCAATC TCACTGCTAG CAGGCCCCAT GGGCTGGAAA TATGGCGACC ATATTATCGA TACACCACCG GATCCCGATG AAGATGATTA CATAGAGAAC TGTGTATACA ACGGTGACCT TGTTGATGAT GAGGGAGTGC TTTATGCTCC AGATGCTAAA AACATCATGA GCGGAGGGAG AAACCGCTGC CGTACACACT TCTCCCCGCA GCAGCAGACT CGTATGCTTA GTCTTATCTC TACCGACAAG TACCACCTTT ATGACAAATA TGGCGAAGGT CGAACCGTGC CAACCTGTGA TAACTCAACC CAAGTGATTG AGTACCCTCA CCATGAAGGC TTTAACGTTA ACGAGGTGGT AGCTGCAACC CCTTGGGTTC AGGATGTCGC CAATAATAGA TATAACTGGC GCTTTGACAG TGACACCTCT TCATCTCGCA CTGGCGCCGA TGAGCCCGTA GAGGGACACA GCTTTATCCA TGTCGACACA AGTAGGATGG ATGATTTTAT TAGCGAGGGC GATCATGTTG CCATGCTCAG CCCCTGCTTT GATTTCACCA CTAAGAACTC ACCAACAATG GCGTTTTACT TCTCTATGTA CGGTGAGGAT ATGGGCACCC TCTCCATTGA AGCCACATTA GATAATGGCC AGAGCTGGCT TCCTGTTTGG CAGATGATAG GTCAAAAGCA CACAGATGGA GAGTGGGAGC AGGTTAATGT GGATCTCGAT GAGTACGCTG GAAAGAAGGT TCAGTTTAGA CTCGATTACC AAGTTCAGGG AGAAAAAGGT GATGCCTCTT TCGATAGCAT ACAGCTAGAT GCCATATCTC AGGACAAGGT ACATGCAGTA TTAAGCAGCG ATAGCGTTGC CGAAGATGGC ATGAGTTTCA CCTTTACCCT ACAAAGAGAG GGCAGCGTTG CTGGTGAAAC CTCGATTCAA GTCGCTACCC AAGATCTGAC AGCCATGGCT GGCATCCATT ATGAGGCCAT CGACACTCAT GTTGTTTTTG CTGCTGACGA AACCACTAAA ACACTAACCA TTAATATCTT AGATAACGAT AATCTGGAAG GTGATACTCA GTTCAACATT ATTCTCTCGG GCGCTAATGC CCCTGTCGAT AATCCACCTC TACTGATCAC TATCATCGAA GATGAAGAGG AGAATATCGC CCCTGTCGCT AGCTTTGACT TTAATGTCAA AAACAGTAAG GTCAGCTTTA CTAGCACCGC TAGTGATGAG GATGGCGAGA TAGTCAGTTA TCTGTGGGAC CTTGGTGATG GAAGCAGTGC AGATACCGAA ACCTTGACCC ATCGCTATGC TCAAAGCGGC GATTATCTGG TGAGCCTCAC CGTGACCGAC GATGACGGCC TGTCTCACAC CAGCTCTCAA ACAGTCTCAG TATCTAAAAA GAGTAAACCT ACCGCTGTGA TTAAGCATAT AAACCTATGG TTTATCGATG TTTTTGTATC GCTTAGCTAT GATGACGATG GCTATATCAC CCAGCACAGA TGGAAATTTA ATGATGGCAG CAAAGCCTCT GGCCCAGTTG CAGTTAAATT TGGTAATCGC GCCTCTAAGG TAAAACTTAT CGTCAAAGAC AATGACAACC TTAAAGGCAG AGCAAAACTC AAATTTAGAT AA
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Protein sequence | MKYSYRSLYG VIALLLFSSQ SLAEDNEVKV LDVRFLVAAA DKQGTDAQAD GETLREGIEK LNLYYQPMGV QFNHKDTVYI TNEDVPGFHD PEDGWDTDDE ELVRPFFDLN SYNILVTELK RLNGHAWWPY EATDAVEVDP EDLIYSTTAH EIGHNLSIRH TYSSNSDGPI SLLAGPMGWK YGDHIIDTPP DPDEDDYIEN CVYNGDLVDD EGVLYAPDAK NIMSGGRNRC RTHFSPQQQT RMLSLISTDK YHLYDKYGEG RTVPTCDNST QVIEYPHHEG FNVNEVVAAT PWVQDVANNR YNWRFDSDTS SSRTGADEPV EGHSFIHVDT SRMDDFISEG DHVAMLSPCF DFTTKNSPTM AFYFSMYGED MGTLSIEATL DNGQSWLPVW QMIGQKHTDG EWEQVNVDLD EYAGKKVQFR LDYQVQGEKG DASFDSIQLD AISQDKVHAV LSSDSVAEDG MSFTFTLQRE GSVAGETSIQ VATQDLTAMA GIHYEAIDTH VVFAADETTK TLTINILDND NLEGDTQFNI ILSGANAPVD NPPLLITIIE DEEENIAPVA SFDFNVKNSK VSFTSTASDE DGEIVSYLWD LGDGSSADTE TLTHRYAQSG DYLVSLTVTD DDGLSHTSSQ TVSVSKKSKP TAVIKHINLW FIDVFVSLSY DDDGYITQHR WKFNDGSKAS GPVAVKFGNR ASKVKLIVKD NDNLKGRAKL KFR
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