| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3836 |
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| Symbol | |
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| ID | 6118185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4678982 |
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| End bp | 4682275 |
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| Gene Length | 3294 bp |
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| Protein Length | 1097 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641635399 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001762190 |
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| Protein GI | 170728164 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.666807 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCACA AAAAAATAAA AATAATAAAT TTTTTATGGA GGAAAAATTT CTATCAATCG
TCTTCCTTTG GTGCGTGGCA AAAAACCATG CATTTGCGGG ATCGAAAACT GATCAGTCAG
CTTTTTTTCT TATGTTTAGT CTCAAGTTTT ACACCTGGGC TAATCGCTAA AGAGGCCGTC
GACAGTGTTG CTTTCAATAT CCCTCAACAA AGGGCCTATT TGTCACTCAT CTATCTGGCT
GAGCAGGCGG ATATTACCCT GCTCTTTTCA TTCGAAAAGG TGGAGGGGAT AGACGTAAAT
GCGGTACATG GCGAATACAA CACCATGGAT GCGCTGAAGT TAATGCTCGA AAATACCGGG
CTTGTTGCAC AGATGAACGA CAGTGGGCAG ATCTCAATCT TATATAATAA AAATCATAAG
AGACAAGACG ATATGACCAC CTACAACAAG AATCAAGTAG CAAGTGCAGT GTTAGCTGCA
ATGGGAACTT TAGCCTCACC GCAGCTATTG GCCGCAGAGG CAGATACCAG TGCCGATACC
AAAATGGAAG TGATTGAGGT CAGTGGGATC AGAGGCTCTC TAAGCCGCTC CATGGATGTA
AAACGCAGTG CTGAAGGGGT TGTTGACTCA ATCTCCTCTG AAGATATAGG TAAGTTTCCC
GACACCAACC TCGCCGAGTC TCTGCAACGA ATTACTGGTG TTTCCATCGA CCGCTCGGGG
GGAGAGGGGC AGTCGATCAC CGTCAGAGGA TTTGGCCCTC AATTCAATAC CGTACTGGTC
AATGGCCGCC AGATAGCCAG TGAAAGTGAT ACCCGCGGCT TTAGTTTCGA CACCATTGCC
GCAGAGCTGG TCAGCAGCTT AGATGTCCAT AAAACCTCAT CGGCCACCAT GCAATCGGGT
GGGATCGGTT CGACCGTGAA CATCAATACA GCAAAGCCTT TCGCCATCAA TGGCTTTAAA
GCCGCTGGTA GTATCAAGGG GATCTACGAT GAGAATAGCG AAGAGACCAC GCCTCAGATC
TCAGGTTTAA TCAGTAACAC CTTTTTAGAT GACAGCTTTG GTGTGCTGCT CGGAGTCTCA
CATCAGGAGC GAAAAACACG CCTAAATCAG GCTCAAATTG ATGGTTGGTT AGAGAATGTC
GGGATCCCAG ATCCTAAAAC AGCCTCAGGA GAAGCCTACA CAGGCAATAT CTTCTCCGCT
CGTAACTATG ATCACAAGGT CACCTTTGAA GATCGCACCA GAACCAATGC CAACTTAGTG
CTGCAATACG CACCAACCGA TAACTTAGTG CTCACCGCCG ATGCACTCTA CTCAGATTTT
GATGTGGAAA CCAATGCCAC CTCATACGGT CACTGGTTCA CAGCGCCTAA CGTCACAGGT
GTCGATGGCG GTAGTCCCAT TGTCGACGCG AATGGTACTG TCGTCGACAT GTATCAAGAG
GTTGGTTTAG CAACGGATTT TCACGCCAAG AAATTTGATC GTATTACAGA TTCAAAATCC
TTCGGCCTGA GTGCCGATTG GGACGTGAAT GATAACCTCA ATATGAGTTT CGACTACAGT
CACTCAGAGG CCAGTCGTGA AGCCAATAAT GGTCGTGGTA ATCAGTTATC ACTTATCGGT
TACGCCAATC GCGTCCGCTT TCAAGTCAAT GACGATATCC TCCCCAACGC CTCAATGTTT
GAATCAGCCA ACCCAAACAT CTATAGCGGT CAACAGGAGC TCGACGGCAC AGCTTACGAT
CCCTCAGTCA CACCAGCAGG TGTACAAGAC TACCTGAGTA CAGATAATAG CCGAGCCCAT
GTGATGCTAC GTCGAGGCTG GGAAGTTCAA GATGAGCTAG ACCAATTTAG ATGGGACAAC
ACTTGGCTTG CCGACGGCGA CACAGGCTTT AGCGCGGCTC GATTTGGTAT GATGTACTCA
ACCGAGACTA AAAGCCTCAA CCGATGGGAT AACGAGGGAG AGGGGCTTCA CTGTGCATAC
TGTGGCTATC CCGACAGTCC CACAATCAGT CCTGATGCGC AGTATATCTT CGATGCTGGC
AGTGACTTCC TCAGTGGTGT TAGTGGTAGC GGCCAGATGC CTACCTCTTG GCTCGCCCAT
GACGGTGAAG CCAACTTTGC CTTTCTTGAG CAGTATTACG CCAGTACAAA CAGTGACACT
ATCAGTTTCG ATGCAGTGCT CAGAGATAAG TCATACAGTG TGCAAGAGGA TATCTTTGCC
GCCTACTTCG AGGTCGATTT TGTCGGCGAG ATCGCAGGCA TGCTCATTTC AAGCACCGCA
GGTGTGAGAT ATGAAACCAC AGACACAGAT GTTAAAGGTC GTGATAAGCC AATAGCTCAG
CTCAACATCT TAGATAAAAC AGAGATGTTA CCCGCCTATG GCAGTGTTGA AGCGATCAGC
CAAGCCAATA GCTATGATGC TATCTTGCCA AGCTTTAGCG TTAAATTAGA GATAACCGAC
GACTTAGTGG CACGACTGGC AGCATCGAAA ACCATGACCC GTCCAACACT CAACAGCATG
TCGCCAATCA CGGTGATCAA CACCACCCGT CCCGGTGGCG ATCTCACCTC CAGCCAAGGT
AACCCTAAGC TCAAGCCATT TAGCTCTGAG AACTTAGATC TCTCCCTTGA GTGGTATTAC
GATGAGGTCA GCTACGTCTC AGCGGGTTAC TTTAGAAAGA ACGTTGAAAA CTTCATCGTT
AATACCCAAG AGGATCTCAC TTTCACCTTA AGTGATGGCA GCTTACTGAC CGATCCCTCG
ACCGGTGATG ACACAGATAA CCCCGACAGC AATGACGGCG TCGCACACTT CACCAATACT
CGTCCCAATA ACGGAGAGTC GGCCATAGTC GACGGTTGGG AACTTGCCGT GCAGCACAGC
TTTGGCGAGT CAGGCTTTGG CGTAATGGCT AATGCAACAC TTGTCAGCAG CAACGCCGAA
CTCGACGCCG CTGATATCAC TCAAGTGTTT GCGCTTACAG GCTTAAGTGA CTCAGTGAAC
CTGGTTGCCT TCTATGAAAG TGGTCCTATC CAGACACGTC TTGCCTGGAA CTGGCGTGAC
TCATTTGTGC AGTCTCTGAC ACAAACCAAT GGCGATGGTC CCACAATCGT TGAGAGTTAC
GCACAACTCG ATTTAAGCGG TAGCTATGAT CTCACCGAGA ACCTAGCAGT CTTCTTTGAA
GGGGTGAACT TAACTGAAGA GTACGTCCAT AAACGCGGAC GCTTCGAAAA CCAACTACTC
TCAGTTGAAG ACAGTGGCCG TCGATTCGCG TTAGGTATAC GCGGCTCATT CTAA
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| Protein sequence | MFHKKIKIIN FLWRKNFYQS SSFGAWQKTM HLRDRKLISQ LFFLCLVSSF TPGLIAKEAV
DSVAFNIPQQ RAYLSLIYLA EQADITLLFS FEKVEGIDVN AVHGEYNTMD ALKLMLENTG
LVAQMNDSGQ ISILYNKNHK RQDDMTTYNK NQVASAVLAA MGTLASPQLL AAEADTSADT
KMEVIEVSGI RGSLSRSMDV KRSAEGVVDS ISSEDIGKFP DTNLAESLQR ITGVSIDRSG
GEGQSITVRG FGPQFNTVLV NGRQIASESD TRGFSFDTIA AELVSSLDVH KTSSATMQSG
GIGSTVNINT AKPFAINGFK AAGSIKGIYD ENSEETTPQI SGLISNTFLD DSFGVLLGVS
HQERKTRLNQ AQIDGWLENV GIPDPKTASG EAYTGNIFSA RNYDHKVTFE DRTRTNANLV
LQYAPTDNLV LTADALYSDF DVETNATSYG HWFTAPNVTG VDGGSPIVDA NGTVVDMYQE
VGLATDFHAK KFDRITDSKS FGLSADWDVN DNLNMSFDYS HSEASREANN GRGNQLSLIG
YANRVRFQVN DDILPNASMF ESANPNIYSG QQELDGTAYD PSVTPAGVQD YLSTDNSRAH
VMLRRGWEVQ DELDQFRWDN TWLADGDTGF SAARFGMMYS TETKSLNRWD NEGEGLHCAY
CGYPDSPTIS PDAQYIFDAG SDFLSGVSGS GQMPTSWLAH DGEANFAFLE QYYASTNSDT
ISFDAVLRDK SYSVQEDIFA AYFEVDFVGE IAGMLISSTA GVRYETTDTD VKGRDKPIAQ
LNILDKTEML PAYGSVEAIS QANSYDAILP SFSVKLEITD DLVARLAASK TMTRPTLNSM
SPITVINTTR PGGDLTSSQG NPKLKPFSSE NLDLSLEWYY DEVSYVSAGY FRKNVENFIV
NTQEDLTFTL SDGSLLTDPS TGDDTDNPDS NDGVAHFTNT RPNNGESAIV DGWELAVQHS
FGESGFGVMA NATLVSSNAE LDAADITQVF ALTGLSDSVN LVAFYESGPI QTRLAWNWRD
SFVQSLTQTN GDGPTIVESY AQLDLSGSYD LTENLAVFFE GVNLTEEYVH KRGRFENQLL
SVEDSGRRFA LGIRGSF
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