| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3824 |
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| Symbol | |
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| ID | 6118173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4660786 |
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| End bp | 4662765 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641635387 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001762178 |
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| Protein GI | 170728152 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCTCT TGCTCCTAAT ATTATTTCTC TTCAGTACCT TTGGTCTCGC CGCACAACCT
AACTCTACTT TTTCACGAAA CTTAAATAGC ATAGAAGAGC AACTCTACTC TCTACCTTTT
AGGGCTCAAG CCCGCTTGAT AGAGATGGAA GAGGTTGACT TAAAAGAGAA GCAACCTATA
CCACTACTTG TTCGCTACTT TACTCTCAGG GCCAGTGCCG CCCTACAGCT CAATGAAGCT
GAGCAGGCTA TCAAGGCCGC AGAAAAAGGA CTTAAGTATG TAAAAGGTAA GCCTGAATTT
AAAGCGGAAC AATTTCAGCT CCAACTCAGA TTCATTCAAG CTCTGTTGAT GCAAGGTAAA
AACCAATTGG TTTTGTCACA ACTGAACAGC CTGCTTGAAG CTACCGAGTC TTTTAACGAT
CCGGCCACCA CAGCTGAGAT CCTATTAGTA AAAGCTCAGG CATATAGAGA TAACGGGGAG
TATGACATCT CCATGGCTGC CATGATGAGT TCATTAGAAA CGGCAAAGCA AGCCGATGAT
CAGGTATTAC TTAAGCGTAT CTCATCAAAT TTAGGTGCAG TCTTACTGAG TCTCAATGGC
TTCGATAAAG CAGAATTACT ACTGGAGCAG TCTTATCTCT TTTTCAAGCA ACGAAAAATG
TCCTTTAACC AGTTACTGGT AAAAATGGAT ATCGCAGAGC TAGCCAAGAA GCGGGGACAA
GATAAAAAAG CGATACATGA GTACCTTAAA GCACTGAATT TAGCTCAGGT ATTAGGGGAT
GGTTTTCACC GCTTTCGCAT CAATCTATTA ATAGCAGAAC TCCTGTTCGA CAGGGGAGAA
ACTGAGCGAA TGAAACAATA CTTACAGGCT AGTGAAGTCT TAAGTGAGCG AGAAAACACC
CGCTACTTCA TCAGCAAATT CAACCTACTT AAGGTTAACG AAAAACTTAT AAATAACAAC
TACCAAGAGG CATTAGATCT CCTCTCTACA CTGCTTCCCA AACTCAATAA ATATAGCTCC
CTCTATCGTT CAGAGCTGCA ACTGCATTTG GCGGCCTCCA AAACGTATTA TGGCTTAGGG
GACTTTGAAA ATGCTTACCT TACCCTACTC AATTACCAAG AAAGCTTTAA TCAATTTAGT
GCTGATGAGC AGCTTGAAAA TCTAGAAAGA CAGAAACTAC TCTATAAATT GGAGCGACTA
AAAGCTGAAA ATCAGCAACT GAGCTGGAAC AATGTGCTGC ACACTTTAGA GCTGGAAAAC
AGTGAAGATG AGATTGAATA CCTCAATATA CTAATATTCT TTGCTATTGT TTCCGTAAGC
TTAACCTCAT TAGCGGCACT CTGGATCAAT CGTCGCCGGA TCCGCTGGGG CAAAATAGCC
AATACAGACA GTCTTACCAA CCTCTACAAC CGACGCTATC TATCCCATAA ATTACTGAGT
CTTAATAAGC CAGATAACGA CGCCCCTCTA TCATGCATAT TGTTAGATAT TGACCTTTTT
AAAGTGGTTA ATGATTCATA TGGCCACATA GTCGGTGACG AAGTACTGGT TAAAGTCGCT
ACGCTATTTA TCAATAATGT CAGAGAGAAA GATATCTGTG CCCGAATTGG CGGTGAAGAG
TTTATGATCT TACTCCCCAA TACAAACTTA CAGCAAGCAT CAGATATCGC AGAAGATCTT
CGGCTAAAGA TAGAAAGCTT ACACTTTGCC TCTCTCAAAG GTGAGCCTTT CACTATCACA
TCTAGCTTTG GAGTCGTTGA GGCAGGTAAA GAGCAAAGTT TCTCCGAACT ATCCAATGCG
GTGGATCTGT TACTTTATAC CGCTAAACAA AATGGTCGCA ATCGTGTCGA AACAGGAACG
CCTAAATTTA CAAACTCCCA GGAGATGGAA CAGGGACATA GTAAAATGGC ACAACAACTT
GCGAACTTAA AACGTAAAGC GCAACGACTA CTCTTTATGC TAACTCAACT TATCAAGTAA
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| Protein sequence | MRLLLLILFL FSTFGLAAQP NSTFSRNLNS IEEQLYSLPF RAQARLIEME EVDLKEKQPI
PLLVRYFTLR ASAALQLNEA EQAIKAAEKG LKYVKGKPEF KAEQFQLQLR FIQALLMQGK
NQLVLSQLNS LLEATESFND PATTAEILLV KAQAYRDNGE YDISMAAMMS SLETAKQADD
QVLLKRISSN LGAVLLSLNG FDKAELLLEQ SYLFFKQRKM SFNQLLVKMD IAELAKKRGQ
DKKAIHEYLK ALNLAQVLGD GFHRFRINLL IAELLFDRGE TERMKQYLQA SEVLSERENT
RYFISKFNLL KVNEKLINNN YQEALDLLST LLPKLNKYSS LYRSELQLHL AASKTYYGLG
DFENAYLTLL NYQESFNQFS ADEQLENLER QKLLYKLERL KAENQQLSWN NVLHTLELEN
SEDEIEYLNI LIFFAIVSVS LTSLAALWIN RRRIRWGKIA NTDSLTNLYN RRYLSHKLLS
LNKPDNDAPL SCILLDIDLF KVVNDSYGHI VGDEVLVKVA TLFINNVREK DICARIGGEE
FMILLPNTNL QQASDIAEDL RLKIESLHFA SLKGEPFTIT SSFGVVEAGK EQSFSELSNA
VDLLLYTAKQ NGRNRVETGT PKFTNSQEME QGHSKMAQQL ANLKRKAQRL LFMLTQLIK
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