| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3757 |
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| Symbol | |
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| ID | 6118106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4571729 |
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| End bp | 4573897 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641635320 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001762111 |
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| Protein GI | 170728085 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG1301] Na+/H+-dicarboxylate symporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00680272 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGATAAAAA AACTCTTTAC CATGACTAGC TCATCTCAGA TGTTAGTCGC CATGTTTATC
GGTTTCGGCG TCGGGATCTT TTTCGGTGAA TCTGTTGGTT GGTTAAGCAC CGTAGGTAAT
GCCGTTATTT TATTGATGCA GATGACAGTA CTTCCCTATA TTTTAGTCTC ACTCATCGGC
GGCATAGGTA AGCTGAAAAA GAGTACCGCG ACCCTTATTT TTAGTCGTGC CGGCCTTATT
ATGCTTCTGC TCTGGCTTTT GGCTTTAGTG ACCATTGCAC TGATGCCGCT CTCCTTTCCC
TTTGTTGAAT CCGCCTCATT CTTCAGTACC AGCAGCATAG AGCCTGCTAC GGCCATAGAC
TACTTTAAGC TCTATATTCC CTCTAACCCG TTCGAGTCGA TGGCAGCAGG ATATGTCCCC
GCTATGGTGG TGTTTAGCAT CGCCATGGGC TTAGCGTTAA TTGGCATGGA GGGGGAGCAT
AAACAGCAGA TATTAACCTT TATGCACACC AGCGGTGAGA TATTTTCCCG CATCACTAGA
GGTTTGGTAA AGGTACTCCC TATCGGTATT TTTGCTATGT CAGCATCGGC AGCCGGTACC
ATGGGGGTGG ATGAATTTGC CAGTATGCAG GTCTACCTTA TCAGTTACTT CGTACTCTGT
TTACTACTGA CATTCTGGAT CTTGCCTTGG ATAGTTTCCT CCCTAACTCC CATCACCTTT
CATCAAGCCC TTAGCATAGC GAAAGCAGGG ATAGTAACAG CGTTCGCCAC AGGTAATATC
TTTATCGTTA TCCCAGTGAT TATAGAAGAG TGTAAGCAGA TAATGGCGGA GCATAATCAG
CTTACTGAAG ATGGTGCGAC TTTGATTGAA ATCTTAGTAC CTATCGCTTT CACTTTCCCC
AATATAGGTA AGTTGACGGT TATCCTATTT GTATTTTTCG CAGGGTGGTT TAACGGAACT
CCAATAGATA TCACGGCTAT TCCTTCGCTC TCTATCAGTG GGCTATTGTC GCTGTTTGGC
AGTGTTTATG TGGCGATCCC ATTTATGCTT GATCTGGTTC ACCTTCCCTC AGATCTCTTC
CAGTTATTTG TGATGTCAGG CTTTATTACC GGGAAGTTTA ACTCTATTGC CGCAGTAATG
AACCTGTTTA CTCTAACACT ACTGACAGCT GCGTTATTTC ACGGTTGCCT CAAGCTATCT
CCTCCTAGAC TTATAAAAAT GGGCCTAGGT ATCGCGGCCG GCACCGCTAT CACTATCGTG
CTATTACGTG TTGGTATGGG GATGTTTATC CATAGTCCAG AGATCACCAG CGGCGTTATT
GCCAATATGC AAGTTGCCGA TAAAGTACCA ACTACCGTTG AGAGGCAGTT CCCACAATTA
GGTAAGACTC CCACCCACCC CATTGCCGAT CTGCAGACTA TCCGTGCAAG AGGCACTTTG
AGAGTCGGCT ATATTCCTAG TAACGTTCCC TTTAGCTACT ACAACAACGC AGGGCAGTTA
GTAGGCTTTG ACAGTGCAAT GGCAAGTAAA CTCGCCGAAG ATTTAGATCT AAAAATAGAA
TTTATCCCTT TTCAGAAAGA TAAGCTGGCT GAATCACTTA AAGCGGGCTT TTTCGATATC
GCCATGTCCG GTTTAGCTAT GGATATCGAG CAGATGGATA AACTTAGCTA TGCTGAGCCA
GTACTTGAGC TAAACCTAGC CATCGCCACC CGCGATCATA TGGTTAACCG CTTTAAAAGC
ACCGAGCGCA TCTTGTCTTT AGAGGAGATG ACCATAGCTT ATGTTGAGCA CAGCGATATT
ATTGAGGAGG CAAAGAGAAA GTACACTAAC CTTAACTTTG TTAAAATTCC TGGTTATAAG
AACTTTTTTA GACAGAAAAG TGATAAATAT GATGCCGTAG TCATCAGTGC TCAAGCAGGC
TCAGCCTGGA CTCTCTTCTT TCCGGGCTAT GGTATAGCAA TACTTGAGAA CAGTGTCCGC
TACCCTGTTG CCTACGCCGT GGCTCAGAAC AATCAATCCC TGCTTAACTA TGTTAATAAT
TGGCAAAAAC TACGTAAGGT CGATGGCCAC CAAGATGCGA TCTATAACTA TTGGATGTTA
GGACAAGGGG CTATTGAGGA GAAACCACGT TGGTCAGTGA TACGTGATGT GCTGCACTGG
GTGGATTAA
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| Protein sequence | MIKKLFTMTS SSQMLVAMFI GFGVGIFFGE SVGWLSTVGN AVILLMQMTV LPYILVSLIG
GIGKLKKSTA TLIFSRAGLI MLLLWLLALV TIALMPLSFP FVESASFFST SSIEPATAID
YFKLYIPSNP FESMAAGYVP AMVVFSIAMG LALIGMEGEH KQQILTFMHT SGEIFSRITR
GLVKVLPIGI FAMSASAAGT MGVDEFASMQ VYLISYFVLC LLLTFWILPW IVSSLTPITF
HQALSIAKAG IVTAFATGNI FIVIPVIIEE CKQIMAEHNQ LTEDGATLIE ILVPIAFTFP
NIGKLTVILF VFFAGWFNGT PIDITAIPSL SISGLLSLFG SVYVAIPFML DLVHLPSDLF
QLFVMSGFIT GKFNSIAAVM NLFTLTLLTA ALFHGCLKLS PPRLIKMGLG IAAGTAITIV
LLRVGMGMFI HSPEITSGVI ANMQVADKVP TTVERQFPQL GKTPTHPIAD LQTIRARGTL
RVGYIPSNVP FSYYNNAGQL VGFDSAMASK LAEDLDLKIE FIPFQKDKLA ESLKAGFFDI
AMSGLAMDIE QMDKLSYAEP VLELNLAIAT RDHMVNRFKS TERILSLEEM TIAYVEHSDI
IEEAKRKYTN LNFVKIPGYK NFFRQKSDKY DAVVISAQAG SAWTLFFPGY GIAILENSVR
YPVAYAVAQN NQSLLNYVNN WQKLRKVDGH QDAIYNYWML GQGAIEEKPR WSVIRDVLHW
VD
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