| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3572 |
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| Symbol | secD |
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| ID | 6117906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4360100 |
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| End bp | 4361914 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641635125 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001761931 |
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| Protein GI | 170727905 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.134678 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00567873 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGAAAAC AGACTAATAG TAAAGTATTA AACCATTACG CTGCATGGAA GTATGTGGTG
TTAGTCGTGA CTTTTATTGT CATGTTACTG AGTGCATTAC CTACATTGTA TGGCGAAGAT
GCGGCCATTG AGGTTGGCGC TAAAGCGAAG TTAAATTTAA CACCTCTACA GCTTAACAAT
GTGCTTAAAA GTGATGATAT TGAGGTTAAG CGCATTGATC ACAATAGTGA TAAAACCCTT
ATTGTCCTAG CTGATGATAG CCAGCAAAGC AAAGCGAAAG CTTTATTAAG CAGTTATATT
GAGGATACAT CAGCATTAAC GCTCGCCTTG GCACCAGCGG CGCCTGATTG GTTACTCTCT
TTAGGGGTTA GGCCAATTAA GCTTGGGTTA GATCTTCGGG GGGGAGTGCA ATTCCTATTG
GATGTTGAAC TTGAACCTGT TTACCAACTC CATTATGACG CCTTTATTGA CAGTGTAAGG
CAGTTTGCCC GTCAACAGGG GATCCCTAGG GTAACAGTTC ATCAAAGTGC CGATTCCAAT
GTGGTTATCA ATTTAGTTAA TTCAGATTAT AAAGGAAAAG TTCGACAGTT TATCGCAACC
AACTATCCAA CATGGCAAGT TTCAAACTCA GACAACTCGG GTCTAAAAGC GGATATCAAA
GCCGATGAAA AGATTAAGAT TCGAGATCTG ACGGTAAAAC AAAATCTGCA GATTATGCGT
AGCCGTATTG AGCAGCTTGG GATCACTGAA GCTTTAGTGC AGCGACAAGG TGAGCACAGG
ATCAGAATTG AGTTACCGGG TGTTCAAGAC CCAGCGGCGG CGAAAAATGT CATCGGAGCA
ACAGCAAGTT TGGCATTTTA TCAGGTTAAG CAGGAGGGCT CTGTTAACGC TCAAATTTTA
AGAGAGCGCT CAGGAAATCC TGTTTATGTC GCTCGTAAAC CTGTTTTAGG TGGGGAGCAT
ATTGTCGATG CCAGAGCCAG CTTAGGTGAA ATGGGAATGT CTGAGGTGGT CATTAATCTT
GACCGCTCTG GTGGGAAGTT CATGTCTGAT TTCTCCCGTG ACAATATCGG TAAACCTATG
GCCACCTCAT ACAGCGAATA CAGCCGTGAT GAGCAGGGAA AGGTGAGGCA AACCACAGAT
ATCATCAGTG TGGCAACGAT TCAATCTCAG TTAGGTGATC GTTTCAGTAT CACAGGTGCG
GGAGATTATG CTCAGGCGCA GCAGTTAGCT TTGTTGCTTA GAGCTGGTTC TATGACAGCT
CCTGTCACCA TTGTCGAAGA GAGAACCATA GGCCCGAGTT TAGGGGCTGA GAATATTGAA
AATGGCTTCT CCGCTTTAGC TTTAGGGATG GCGATGACGT TACTTTTCAT GGGGCTTTGG
TATCGCCGTT TAGGTTGGGT TGCGAATGTC GCGCTGCTTG CCAATATGGT TATTCTGTTT
GGTCTGCTTG CCCTTATTCC TGGTGCAGTG CTGACACTGC CGGGTATCGC GGGGCTGGTA
TTAACAGTAG GCATGGCCGT TGATACTAAT GTGCTTATTT TTGAACGGAT AAAAGATAAA
TTGCAGGAGG GGAGGGGCTT TGCCCATGCA ATTGATAGAG GTTTTGACAG TGCAGTTGCA
ACTATTTTCG ATGCCAACTT CACCACTATG ATCACAGCTG TGGTGCTCTA TTCCATTGGT
AATGGGCCAA TTCAAGGATT TGCTCTTACT TTAGGTTTAG GGCTATTGAC CAGTATGTTT
ACGGGAATTT TTGCCTCAAG GGCACTAATT AACTGGAAGT ATGGGCGCGA CTTTAGCCGT
GATGTGAGGG TGTAA
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| Protein sequence | MRKQTNSKVL NHYAAWKYVV LVVTFIVMLL SALPTLYGED AAIEVGAKAK LNLTPLQLNN
VLKSDDIEVK RIDHNSDKTL IVLADDSQQS KAKALLSSYI EDTSALTLAL APAAPDWLLS
LGVRPIKLGL DLRGGVQFLL DVELEPVYQL HYDAFIDSVR QFARQQGIPR VTVHQSADSN
VVINLVNSDY KGKVRQFIAT NYPTWQVSNS DNSGLKADIK ADEKIKIRDL TVKQNLQIMR
SRIEQLGITE ALVQRQGEHR IRIELPGVQD PAAAKNVIGA TASLAFYQVK QEGSVNAQIL
RERSGNPVYV ARKPVLGGEH IVDARASLGE MGMSEVVINL DRSGGKFMSD FSRDNIGKPM
ATSYSEYSRD EQGKVRQTTD IISVATIQSQ LGDRFSITGA GDYAQAQQLA LLLRAGSMTA
PVTIVEERTI GPSLGAENIE NGFSALALGM AMTLLFMGLW YRRLGWVANV ALLANMVILF
GLLALIPGAV LTLPGIAGLV LTVGMAVDTN VLIFERIKDK LQEGRGFAHA IDRGFDSAVA
TIFDANFTTM ITAVVLYSIG NGPIQGFALT LGLGLLTSMF TGIFASRALI NWKYGRDFSR
DVRV
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