| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3457 |
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| Symbol | |
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| ID | 6117789 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4228971 |
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| End bp | 4231115 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 641635011 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001761819 |
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| Protein GI | 170727793 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000557237 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCGCGCAT CTCTATTTTT CGTCTCATTT TTTCTTATGT TTTCATGGAG CTCGGCCAAT
GCTCAAGATG ACATAGCATT AGAGATAAAA TTAAACGAAG ACCCAACTCA ACTCTATGAA
GAGCTTATCT CCTCGATAAC ACTTCCTATC GACGCCGCTA ATATCGAAGA ATTTAAGCGG
GCAGCTAAGG CGCAGGGATA TGAGCCCCAA GCGCTAAAAA ATAAACTTCA ACTGTTAACC
CGTGTTTATC TTGATACCAG CACCAAGGTG CAAAATAAAT ACCTTCACAG TGAAAAACTG
ATAGCTCTAC TTGAAAGAGT GAGCGAAAAC GATTTTGATA AAAGCTACGT TAACGCGCTA
AAAGGTCGCC ATATTGGCCG AAGTAAAAGT GACTACACCA CTGCGATAAA GTTTTATAAC
AAATCAATAA AACTCTTTAA TGAAGAGAAC ACGACCCAAT CTAGAATCCT AAAAATAGTT
ATCCATAAGA ACTTAGGTAC CTTACATCGA CTCATTAGAC AAGATAAACC CGCTCAACAA
CACCTTAATC GATACAGAGA AAGCGCTTAT GAGTTAAAAA ACAACTACCT TATCGCTCAA
GCCGAATCGG CATTAGGCCA CTTTTATAAT AGGCAAGGTC AGCTAGCTCT CGCACTACAG
CACTACTCTG AAGCCTTACG ACTGTCCAAT AAAGAAAACA AACCCTTTTT AAAAGCGAAC
TTAAAACTGA AACTGGCTCG GGTATATCGA GATCTGAAAT CTTGGGATGA AGCACTTATA
TATGCCGATG AAGCCTCTAA AGATTTTAAA AAGTTAAATA AAGAGGGTTA TCAGTCAAGC
TGTATGACTG TAATGGCGAT GGTACATGCC AATCAAGGTC AATGGAATCA GGCCATCGAC
TACTACCTTA CCGCTCAACA GCTGGATCTT GAAAGTGAGA ACCTAACCTC TCAAGCACTT
AACTATCATA ATTTAGGTGA GGCCTACTTC CACAACGGCA ACCCTCAATA CGCATTAGAG
TTTCTCTTTA AATCTAACGC GCTTTTTCTG GAAAGAAAGA GTAAACACTA TCTTGTCTAT
AATGAGCTTC TCATTGCTGA AGTTGCTTTG GCCCAAAAAG AGTTCTCTCT TGCCGACAAA
CATAGTGTTT TAGCCCTTAG CAACGCTGTT GCCCTCTCCC TACATGATGA ACAGATTAAA
GCACTACAAT ACCGCTCACA AGCACTAAGG GGCTTAGAAG ATTTCAGTCA AGCATTTGAA
GTCCTAGATA AACTGATACT TCTCAATCAA AACCCTCCTG AAAAAGCATC AACAGTTGAG
CCGTTTGCCG CTTCTGTACT CACTGAGCAG AAATTAAAGA TACAGCTCAC CCAACTAAAG
GGGCAGCAAA ATGAGCTAAA CACCCAAGTA GCCCGCTCAA GAATTTTATT GATAACGGCA
TTTACCCTAA CGTTTTTACT CACACTGTTA GGCCTCAACC TTTGGCGACG AGCTAAATCA
TTAACCTCTG AATTAACAGA AGCTAGATTA CAAAGTGTCA ATGAGCCAAT AACTGGGCTT
CCTGGTTATA GGGGATTTAC CAATGAACTT AATGCAAAAG TTAAGCCCTC ATATATTGCG
CTCCTCTCCT TAACAGACCT ATTAGATGAT GATCTGTCTC AAGGTGTTCA AAATAACACC
GAGTCGATTA AACTGATTTT CAATCAGTTA TCCAGTAGTT TTAACTCAGG AGTTTACCTT
ATCAGGCCGG GGCTGTTCTT GTTGAACATT CACGAGTCAA CAACCCCGTC AGCGCTCTTT
GAGAGATGCA AAAAAATCAC CTCTTCATGT GATATCAAAA CCACTATCCA CATGGGTATC
TTGCCTCTTC CCCTGCTTGC GGATCTGGAT ATAAAAATCA GCCCTAAAAC GCATTTTGGC
ACAGCACAAT TTGCACTGAC AGGCGCATTA AGTTTAGGTA AGGATAAAGA TTATTTTGTG
ATGCTTAAAT CACTCAATTT TGCGCCACCT GCAATATTTT CTACCCCACT GTTTTTACAC
TTAGAGAAAG GAGTAAAACG GGGCTTACTC AAGATTGAGA CAAATGGTGA TAAAACCCAA
CTAAGCTGGC CCAAATGGAA AAGTCATGAA AATATCGATA TTTAG
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| Protein sequence | MRASLFFVSF FLMFSWSSAN AQDDIALEIK LNEDPTQLYE ELISSITLPI DAANIEEFKR
AAKAQGYEPQ ALKNKLQLLT RVYLDTSTKV QNKYLHSEKL IALLERVSEN DFDKSYVNAL
KGRHIGRSKS DYTTAIKFYN KSIKLFNEEN TTQSRILKIV IHKNLGTLHR LIRQDKPAQQ
HLNRYRESAY ELKNNYLIAQ AESALGHFYN RQGQLALALQ HYSEALRLSN KENKPFLKAN
LKLKLARVYR DLKSWDEALI YADEASKDFK KLNKEGYQSS CMTVMAMVHA NQGQWNQAID
YYLTAQQLDL ESENLTSQAL NYHNLGEAYF HNGNPQYALE FLFKSNALFL ERKSKHYLVY
NELLIAEVAL AQKEFSLADK HSVLALSNAV ALSLHDEQIK ALQYRSQALR GLEDFSQAFE
VLDKLILLNQ NPPEKASTVE PFAASVLTEQ KLKIQLTQLK GQQNELNTQV ARSRILLITA
FTLTFLLTLL GLNLWRRAKS LTSELTEARL QSVNEPITGL PGYRGFTNEL NAKVKPSYIA
LLSLTDLLDD DLSQGVQNNT ESIKLIFNQL SSSFNSGVYL IRPGLFLLNI HESTTPSALF
ERCKKITSSC DIKTTIHMGI LPLPLLADLD IKISPKTHFG TAQFALTGAL SLGKDKDYFV
MLKSLNFAPP AIFSTPLFLH LEKGVKRGLL KIETNGDKTQ LSWPKWKSHE NIDI
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