Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3256 |
Symbol | |
ID | 6117575 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3991965 |
End bp | 3992843 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641634800 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001761621 |
Protein GI | 170727595 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.14149 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACTTA GACACATAGA GATATTTCAC GCCATCTACA CCACAGGCTC TATCACCAAT GCTGCTAAAA TCTTGCATGT GTCTCAACCC TCAGTCAGTA AGGTGCTGTC ACACGCCGAG CTGCAGTTGG GATTTCAGTT ATTCAACCGA GTAAAAGGGC GATTGACGCC CACCGAAGAA GCAAAAATAT TATTTGGTGA TGTTGATAAA ATCTATCAAC AATTAAGATC CATTAAAAAC ACGGCTAACA ATATTAAAAA ATCAGAATTT GGAAGCATCA AAATAGGGCT TACCCCTGCA CTTGGTTTTG ACAGCATTCC AGAAGCCGTG GCCAACTTTC ATCGTGATCA CCCTGCAGTG AGTATTCAAT TGCAGACCAT TCACAATGAA TCGGTGATGC ACACCCTGCT TGAAAGAAAG TGCGACCTTG CCATTGTCTT CTCCCCGGAT AAACAACCTG GTCTCAATGA GATAGAACTG GCTCGCTCAG AACTCACCAT CGTTTACCCT AAGGCACTGT TCCCGCACTG CCCCACTAAA CTCTCTTTTG CAGAGCTGAG CGAACATGAA TTTATCGACA TCGGAGATAG CGGTCCACTT GGGGATCTAC TCTGGACTCG AATGCTTGAA GAGAATATCA ATATAACCCC CAATATTAGG GTACAAACCT ATTTCCTTGC AGCCAGAATA GTGGCGCAAA ATATTGGACT GTGTGTGGTC GATAAACTTA CCGCCCTTGG CAATCTATCC CCAAATACGG CAATGGCTTC ATTTGACCCA CCATTAGAGT TTAGTATCAG TGCATTACAC TTAGAGAACA GCAATTTATC TTCCGCTAAC AAAGAGTTTT TAAATTATTT AACCAGTGTA ATATCATAG
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Protein sequence | MRLRHIEIFH AIYTTGSITN AAKILHVSQP SVSKVLSHAE LQLGFQLFNR VKGRLTPTEE AKILFGDVDK IYQQLRSIKN TANNIKKSEF GSIKIGLTPA LGFDSIPEAV ANFHRDHPAV SIQLQTIHNE SVMHTLLERK CDLAIVFSPD KQPGLNEIEL ARSELTIVYP KALFPHCPTK LSFAELSEHE FIDIGDSGPL GDLLWTRMLE ENINITPNIR VQTYFLAARI VAQNIGLCVV DKLTALGNLS PNTAMASFDP PLEFSISALH LENSNLSSAN KEFLNYLTSV IS
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