| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2880 |
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| Symbol | |
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| ID | 6117195 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3521747 |
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| End bp | 3523231 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641634426 |
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| Product | formate/nitrite transporter |
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| Protein accession | YP_001761250 |
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| Protein GI | 170727224 |
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| COG category | [K] Transcription
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG2116] Formate/nitrite family of transporters
[COG2524] Predicted transcriptional regulator, contains C-terminal CBS domains |
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| TIGRFAM ID | [TIGR00790] formate/nitrite transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.910131 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000564584 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGTCTA ATCAAAAGGT TAGTGGACTG ACCTTAGCGA GAGTGATGCA AAATAGCGAG
GAGGTGACTC AGACCGCGCC AGTGAGCTTA TACCAACAAG CAGAGCACTA TGGCAAAAGT
AAAGTGGTTA AATCAGCTTG GCAATCTTTT GGTTTAGCGG CGTTTGCTGG TGCCTTTATT
GCGTTGGCTT TTGTTTTCTA CATCACAGTC ACCACAGGCA ACGATGGAAG TGCATGGGGC
TTAATGCGTT TGGCGGGTGG CTTAGCATTT AGCTTAGGCT TGATGTTAGT TGTTATCTGT
GGTGGTGAGC TCTTTACCAG CACAGTGCTA AGCAGCGTTG CTTGGGCTCA AAAGTTAGTG
ACAGGTCGCG AGCTCATCAA ATGTTGGGGG CGGGTCTATG TAGGCAATCT GTTAGGTGCT
TTGATTATGC TTTTTCTGAT CATGTCGGCT CGTATGTATG ATCTTGATGG TGGTCAATGG
GGTCTAAACG CACTACAGAT AGCGCAACAT AAACTTCATC ATACTTGGTT GCAGGCCTTT
GTACTTGGGA TCTTGTGTAA CATGCTGGTG TGTTTGGGCG TGTGGATGAC CTTTTCGAGT
AAAGATGCGC TGACCAAAGC TGTGCTACTT ATGCTACCTG TTGCCATGTT TGTCAGTAGT
GGTTTTGAGC ACAGTATTGC AAACCTGTTT ATGGTGCCGT TAGGGATCGC TATTTCACAA
TTTGCCCAAC CTGAGTTTTT TATCAGTCTT GGTATCGATG CCGCACAATT TACCGATCTG
ACAATGAGTC ATTTTATTGT TAACAACCTC ATCCCAGTGA CCTTAGGCAA CATAGTTGGC
GGAGGCGTAT TTGTCGGTTT AGGTTACTGG CTCATTGAAA AGTCAGCTCA AAAGATTAAA
ACCCCACTTG CTCTTTGCGT ACCACAGTTA GAGACCTCAG CTCAAATACA CTCAATTTCG
ACTTCAGGAG TATCGAATAA AATGCCAAAA ACAATTCAAA AACTATGTGT GCAAGATCTA
ATGGATACTA GCCCGTTAAC CATCTCTTCA GAGCAGTCGG TCTATGCAGG TCTTGCATTA
CTGACCGATA ATGACTGTCG TAGCGCACCA GTGCTTGATG AAAATCAGCA CCTACTTGGA
TTTATCTCTC AGCAAGACTT GTTGCGCAGT TTATGGTCTG AAGAGTTTGC CAGAGGCGTC
TCTTATAAGG TGGCTGATTT GATGCAAAAA GAGGTGATGA CCCTATCACC ACAGGATTCG
GTTGCCGAGT TGATAGAGTT GATGGTGGTG GACCGTAACA AGCTGTTCCC TGTGAATGAA
AGTGGGATTT TAACGGGCAA CACCTTCAAA AGCTATGAAG AGAGGTTACG TTGTGCTTCA
GCTAATAAAC CGAGTGTTTT TCCTGTCGTA GAGAAAGGTT TATTGCGCGG TGTTATCACT
CGTGAGGCGA TAGCCAGAAA GGTATGTGAT ATCTACAAGG TATAA
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| Protein sequence | MTSNQKVSGL TLARVMQNSE EVTQTAPVSL YQQAEHYGKS KVVKSAWQSF GLAAFAGAFI
ALAFVFYITV TTGNDGSAWG LMRLAGGLAF SLGLMLVVIC GGELFTSTVL SSVAWAQKLV
TGRELIKCWG RVYVGNLLGA LIMLFLIMSA RMYDLDGGQW GLNALQIAQH KLHHTWLQAF
VLGILCNMLV CLGVWMTFSS KDALTKAVLL MLPVAMFVSS GFEHSIANLF MVPLGIAISQ
FAQPEFFISL GIDAAQFTDL TMSHFIVNNL IPVTLGNIVG GGVFVGLGYW LIEKSAQKIK
TPLALCVPQL ETSAQIHSIS TSGVSNKMPK TIQKLCVQDL MDTSPLTISS EQSVYAGLAL
LTDNDCRSAP VLDENQHLLG FISQQDLLRS LWSEEFARGV SYKVADLMQK EVMTLSPQDS
VAELIELMVV DRNKLFPVNE SGILTGNTFK SYEERLRCAS ANKPSVFPVV EKGLLRGVIT
REAIARKVCD IYKV
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