Gene Swoo_2854 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2854 
Symbol 
ID6117169 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp3488596 
End bp3490560 
Gene Length1965 bp 
Protein Length654 aa 
Translation table11 
GC content45% 
IMG OID641634400 
ProductTPR repeat-containing protein 
Protein accessionYP_001761224 
Protein GI170727198 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000521084 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGACAATT TTTTCCTCAA ACAGCTTCTC CTTGCGTGTC TATGTTTAAT CTGTCTCCCC 
GTTTATTCTG TTGGAACATT GCAAGCTCCT CTTGGCTTTG AGGTCACTAC CGGAGCCGCG
GCAGGCTACG TTGACAGCAA GGCGTGCGCT GTTTGCCATA ACGAGCTATA TCAATCTTAT
CAAGAAGTGG GAATGGCAAA CTCGTTCTTT CCCGCAAAAG TGGAGCATGC GCTTGCGAAC
TATAATGCTG AGCCTTTGTA CCATAGCGCG AGTCAGCGTT ATTATCAGAT GCGAAAAACG
GATAGCGAAA TCATCTTCAA GCGTTATCAA AAAGATGCTG ATGGTAAGGT GATTAACCTG
TTTGAACAGA GAGTGGATTG GTTTTTAGGC TCAGGTAATA AGGTGCGCAG CTATCTGTAT
CAAACTGAAA ATGGCCAGCT CTATCTGCTT CCAATTGATT GGTACTCTGA AACTGGCGAG
TGGCAGATGC ATCCAGGATT TGAGGAAAAA GATCACTCAG GAGTGTTAAG AGAGGTGAAC
CGTGAGTGTA TGTTTTGCCA TAACGCATAT CCTCAGGTAG AGCAGGGCAG CGATATTGCT
TGGAAACCAA ATCTTTTTCC TAAAAACTTA CCCCATGGCA CAGGTTGCCA GCGCTGTCAC
GGTCCAGGTG CTAAGCATAT TCAAACGGCA TTAGATGTAG AGCCTTTAAC TGATATCCGC
AGCGCGATAA CAAACCCTGC TAAACTCTCC AACCGTCAGC GAGACTCGGT ATGCTTGCAG
TGTCATCTGC TCCCATCTGG CGCTATCGTT GGTCAGCGCC GTTTCGAGCG ACCTATCTAC
TCATTTCGCC CTGGTGAGTT TATCAATGAT TATCTCTTAC ATGTTGATGT CGTGGATGCT
GAGTTGCCAA AAAGTGAGCG ATTTGAGATT AACCATCAAG GTTATCGCTT CCTACAAAGC
CCCTGTTACT TAAAAAGTGA GGGCAAGCTA ACGTGTATTA GCTGCCATAA TCCCCACAAA
AAAGTAACCC AAGAGGAGAG AGTTGAGCAT TTCTCCGCTG TCTGTAAAAG TTGTCACACT
CCACATCAAG CAATTGTTTC TGACGATATT AAAAACAGTA AAGATTGTAC TGGCTGCCAT
ATGCCTAAAA GGCGTGCTCA AGACGTGGTT CATGCGGTGA TGACTGATCA CCGCATTCAA
GTAAAAAGTG CTTCAGCCAG AGAGCGACTC GCTCCTATGG ATAAAGTCCC ACCGAAAATC
AATGCGCTTG ATTTTTTGTT ACCCAGCCTA TCTCCCAAAC ACGCCGAAGG TGAGATCTAT
AAAGCGGTAT CGGTACTACA AAGTTTCACC TCTCCTAGCA TGGTGGATAA GTTACAGGCG
AATCTATTGA AATCTGAGTT CAAAGAGATC ACTCCTTGGC TAGTTTTAGC CAATGCTCAG
ATTAATTTAA AACGCTTTCA AGACGCCGAG AAAACTTTGA ATAGGGCACT TGAAATTGAG
AAGGCTAACC CTAAAGCTCT GCAGTTATCT GCAGTCGCGA TGCTAACTCA GGGGAAGGCA
GAGCTGGCAG AAAGTCTGTT TAAACAGGCG CTGATGCAAC AGCCAAACTC TGCTGATCTT
AATTTTAATG ACGGATTACT GCAGCTTAAT AACTCAAACT ACAAAAAAGC TGAGAAGCGT
TTTCAAAAGG CGATATCTCA GCGGCACAAT CTCGCGATTG CTTGGTACTA CTTAGGTTAC
TTGGCGAATA AAGAGAGGCC TAGTATGCAA GCCATTGTCC ACTTTAAGCG GGCTTTGGAG
ATTGAGCCAA GTCATACTCG CTCCTATATC GCCATTGCTG AAACTTATAT CAAACTTGGC
AAACATGAGC AGGCGTTACG GTATTTAACC CATGGCGGCA TGGTTGCAAC TCAACCGGGC
TTAATCCTTA AAAAGTTGAA ACAACTACAG AGTCGCCCCA AATAG
 
Protein sequence
MDNFFLKQLL LACLCLICLP VYSVGTLQAP LGFEVTTGAA AGYVDSKACA VCHNELYQSY 
QEVGMANSFF PAKVEHALAN YNAEPLYHSA SQRYYQMRKT DSEIIFKRYQ KDADGKVINL
FEQRVDWFLG SGNKVRSYLY QTENGQLYLL PIDWYSETGE WQMHPGFEEK DHSGVLREVN
RECMFCHNAY PQVEQGSDIA WKPNLFPKNL PHGTGCQRCH GPGAKHIQTA LDVEPLTDIR
SAITNPAKLS NRQRDSVCLQ CHLLPSGAIV GQRRFERPIY SFRPGEFIND YLLHVDVVDA
ELPKSERFEI NHQGYRFLQS PCYLKSEGKL TCISCHNPHK KVTQEERVEH FSAVCKSCHT
PHQAIVSDDI KNSKDCTGCH MPKRRAQDVV HAVMTDHRIQ VKSASARERL APMDKVPPKI
NALDFLLPSL SPKHAEGEIY KAVSVLQSFT SPSMVDKLQA NLLKSEFKEI TPWLVLANAQ
INLKRFQDAE KTLNRALEIE KANPKALQLS AVAMLTQGKA ELAESLFKQA LMQQPNSADL
NFNDGLLQLN NSNYKKAEKR FQKAISQRHN LAIAWYYLGY LANKERPSMQ AIVHFKRALE
IEPSHTRSYI AIAETYIKLG KHEQALRYLT HGGMVATQPG LILKKLKQLQ SRPK