| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2854 |
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| Symbol | |
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| ID | 6117169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3488596 |
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| End bp | 3490560 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641634400 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001761224 |
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| Protein GI | 170727198 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000521084 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACAATT TTTTCCTCAA ACAGCTTCTC CTTGCGTGTC TATGTTTAAT CTGTCTCCCC
GTTTATTCTG TTGGAACATT GCAAGCTCCT CTTGGCTTTG AGGTCACTAC CGGAGCCGCG
GCAGGCTACG TTGACAGCAA GGCGTGCGCT GTTTGCCATA ACGAGCTATA TCAATCTTAT
CAAGAAGTGG GAATGGCAAA CTCGTTCTTT CCCGCAAAAG TGGAGCATGC GCTTGCGAAC
TATAATGCTG AGCCTTTGTA CCATAGCGCG AGTCAGCGTT ATTATCAGAT GCGAAAAACG
GATAGCGAAA TCATCTTCAA GCGTTATCAA AAAGATGCTG ATGGTAAGGT GATTAACCTG
TTTGAACAGA GAGTGGATTG GTTTTTAGGC TCAGGTAATA AGGTGCGCAG CTATCTGTAT
CAAACTGAAA ATGGCCAGCT CTATCTGCTT CCAATTGATT GGTACTCTGA AACTGGCGAG
TGGCAGATGC ATCCAGGATT TGAGGAAAAA GATCACTCAG GAGTGTTAAG AGAGGTGAAC
CGTGAGTGTA TGTTTTGCCA TAACGCATAT CCTCAGGTAG AGCAGGGCAG CGATATTGCT
TGGAAACCAA ATCTTTTTCC TAAAAACTTA CCCCATGGCA CAGGTTGCCA GCGCTGTCAC
GGTCCAGGTG CTAAGCATAT TCAAACGGCA TTAGATGTAG AGCCTTTAAC TGATATCCGC
AGCGCGATAA CAAACCCTGC TAAACTCTCC AACCGTCAGC GAGACTCGGT ATGCTTGCAG
TGTCATCTGC TCCCATCTGG CGCTATCGTT GGTCAGCGCC GTTTCGAGCG ACCTATCTAC
TCATTTCGCC CTGGTGAGTT TATCAATGAT TATCTCTTAC ATGTTGATGT CGTGGATGCT
GAGTTGCCAA AAAGTGAGCG ATTTGAGATT AACCATCAAG GTTATCGCTT CCTACAAAGC
CCCTGTTACT TAAAAAGTGA GGGCAAGCTA ACGTGTATTA GCTGCCATAA TCCCCACAAA
AAAGTAACCC AAGAGGAGAG AGTTGAGCAT TTCTCCGCTG TCTGTAAAAG TTGTCACACT
CCACATCAAG CAATTGTTTC TGACGATATT AAAAACAGTA AAGATTGTAC TGGCTGCCAT
ATGCCTAAAA GGCGTGCTCA AGACGTGGTT CATGCGGTGA TGACTGATCA CCGCATTCAA
GTAAAAAGTG CTTCAGCCAG AGAGCGACTC GCTCCTATGG ATAAAGTCCC ACCGAAAATC
AATGCGCTTG ATTTTTTGTT ACCCAGCCTA TCTCCCAAAC ACGCCGAAGG TGAGATCTAT
AAAGCGGTAT CGGTACTACA AAGTTTCACC TCTCCTAGCA TGGTGGATAA GTTACAGGCG
AATCTATTGA AATCTGAGTT CAAAGAGATC ACTCCTTGGC TAGTTTTAGC CAATGCTCAG
ATTAATTTAA AACGCTTTCA AGACGCCGAG AAAACTTTGA ATAGGGCACT TGAAATTGAG
AAGGCTAACC CTAAAGCTCT GCAGTTATCT GCAGTCGCGA TGCTAACTCA GGGGAAGGCA
GAGCTGGCAG AAAGTCTGTT TAAACAGGCG CTGATGCAAC AGCCAAACTC TGCTGATCTT
AATTTTAATG ACGGATTACT GCAGCTTAAT AACTCAAACT ACAAAAAAGC TGAGAAGCGT
TTTCAAAAGG CGATATCTCA GCGGCACAAT CTCGCGATTG CTTGGTACTA CTTAGGTTAC
TTGGCGAATA AAGAGAGGCC TAGTATGCAA GCCATTGTCC ACTTTAAGCG GGCTTTGGAG
ATTGAGCCAA GTCATACTCG CTCCTATATC GCCATTGCTG AAACTTATAT CAAACTTGGC
AAACATGAGC AGGCGTTACG GTATTTAACC CATGGCGGCA TGGTTGCAAC TCAACCGGGC
TTAATCCTTA AAAAGTTGAA ACAACTACAG AGTCGCCCCA AATAG
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| Protein sequence | MDNFFLKQLL LACLCLICLP VYSVGTLQAP LGFEVTTGAA AGYVDSKACA VCHNELYQSY
QEVGMANSFF PAKVEHALAN YNAEPLYHSA SQRYYQMRKT DSEIIFKRYQ KDADGKVINL
FEQRVDWFLG SGNKVRSYLY QTENGQLYLL PIDWYSETGE WQMHPGFEEK DHSGVLREVN
RECMFCHNAY PQVEQGSDIA WKPNLFPKNL PHGTGCQRCH GPGAKHIQTA LDVEPLTDIR
SAITNPAKLS NRQRDSVCLQ CHLLPSGAIV GQRRFERPIY SFRPGEFIND YLLHVDVVDA
ELPKSERFEI NHQGYRFLQS PCYLKSEGKL TCISCHNPHK KVTQEERVEH FSAVCKSCHT
PHQAIVSDDI KNSKDCTGCH MPKRRAQDVV HAVMTDHRIQ VKSASARERL APMDKVPPKI
NALDFLLPSL SPKHAEGEIY KAVSVLQSFT SPSMVDKLQA NLLKSEFKEI TPWLVLANAQ
INLKRFQDAE KTLNRALEIE KANPKALQLS AVAMLTQGKA ELAESLFKQA LMQQPNSADL
NFNDGLLQLN NSNYKKAEKR FQKAISQRHN LAIAWYYLGY LANKERPSMQ AIVHFKRALE
IEPSHTRSYI AIAETYIKLG KHEQALRYLT HGGMVATQPG LILKKLKQLQ SRPK
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