| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2719 |
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| Symbol | |
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| ID | 6117018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3327282 |
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| End bp | 3330671 |
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| Gene Length | 3390 bp |
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| Protein Length | 1129 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641634250 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_001761090 |
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| Protein GI | 170727064 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3325] Chitinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0716218 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00441293 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTAACA AAACTGCATA TTTGAGCAGG CGTCACCGCT TAGCTCTGTT AATAAGCACG
GCCTTGATGA GTCAAGGGGT GATTAATCAG GCTTACGCTG TCGATTGCCA AGGGGTCGCA
CCTTGGTCAG CTGATACCGT ATACGCCACA ACGACACAAG TCACACAATC AAATGGCCTT
TATCAGAATA AGTGGTGGAC AACAAATGAG TCTCCATCTG AGGCTGGACA ATGGGGAGTT
TGGGAAACCT TAGGTCAATG TGATGGCATA TCAAATCAAC CCCCTGTGGT TAATATTCTC
TCTCCTTTAG CCGATGCACG CGTGCTTTTA AATGATTCCG TTATTCTTGA TGCTGAGGTG
ACTGACAGTG ATGGAACTTT AACTTCTCAG GTGTGGACGG CTAATGGAGC TGTGGTTACT
TCCCCTTGGA TTGCTCAAGA GCAAGGTAGT GTGGTTCTGA CACTAACCGC TACCGACAAT
GACGGTGCCA GCACAGAGCA GAGCGTAACA GTTACTGTTA TTAATGGGCA AAATCAACTT
CCTGTCACTT CGATTATTTC GCCTACAAAT GACAGCGTTG TCACCTATGG TGATGATCTT
GTAATCTCTG CAACGGCTTC CGATCCAGAT GTGGGTGATA GCATCGCTAA GCTTGAATTG
CTTGTAGATG GCGTGGTTTC AGGCACAGAT CTTACTTCTC CTTATGAGTT CAACTGGACA
GCCTCATCGG AAGGGGGTCA TACATTACAA ACTCGTGCTT TTGATCTACA AAATGACAGC
GCTGTCTCTG AGTTGGTAAA TATCAATGTA AGCGCAGCTA ACCAGTTACC CAGTGTTGTT
CTATCTGCAC CAAATGCCAA CTTTTCTTTA CCTATCAATG GTGAACTCAC TATTAGTGCT
GATGCCCAAG ATGTTGATGG TGAGGTGGTA AGTGTGAGTT TTTACGCAAA TGGTCTACTT
ATTGAAACCG ATACAGTAGC ACCGTTTACG GCACTCTACA CTGGAATAGA GGCTGGCGAT
CTCTCCATTA CAGCGCAGGC GACAGATAAC TTAGGTGCAA ATACGTTCTC ATCTGCCGTA
ATGGGTTATG TCGGTGACAG ACCCACTAGC CATGAAGTTT GTCGTCCAGA TGGTTTAGAG
GGGGACTCAG TTTATTGTGA TATTTATGAT GAGCAGGGTC GCGAGAAGAT GGGAGCTGAT
CATGCACGAC GTGTGATTGG TTACTTTACC TCTTGGCGAA ATGGCACTAA TGGTCAACCC
AGCTATCTGG TAAATGATAT TCCATGGGAT AAGATCACTC ACATCAACTA CGCCTTTGCT
CATGTTAATA GTGACAATAA AGTCTCTGTC GGCAATCCAA ACAGCGTCGA TAATCCTGCA
ACAGGCATGA CATGGTCGGG TGTTGCGGGT GCTGAGATGG ATCCTGAATA CAGTTATCAG
GGCCACTTTA ATCTACTTAA TAAATACAAG AAGCTACACC CTCAAGTGAA AACGCTCATC
TCCATTGGTG GTTGGGCTGA GACTGGCGGG TATTTTGATG AGAATGGCGT GAGAGTTGCT
AGTGGTGGCT TCTACGAGAT GACCAAGACG CAGGCTGGGA TAAACACTTT TGCAGATTCT
GTGGTGGATT TCTTACGGAC CTATGGCTTC GATGGTGCAG ATATCGATTA TGAATACGCA
ACCTCTATGG CTAAGTCGGG TAACCCTGAT GATTTTGCTA TTGCAGATCC CCTAAGGGCT
ACCTTGTTTG CCCAATATGA TTTGCTGATG AAAACATTGC GGGAGAAGTT GGATATTGCC
AGTAAGCAAG ATGGTAAACA TTACATGTTA ACTGTTGCGG CGCCAGCTTC TGGTTACTTG
TTGCGTGGTA TGGAAGCGTA TCAAATGTCA CGCTTTCTCG ATTACGTTAA CATCATGAGT
TATGACCTTC ATGGTGCTTG GAATGATTTT GTAGGCCACA ATGCTGCGCT TTTCGATACT
GGTGAAGATG CCGAATTGGC ATTTTGGGAT GTGTACTCAA CCGCGCAATA TGGCGGGATA
GGTTACTTAA ATACTGACTG GGCTTACCAC TACTTCCGTG GCGCCATGCC TGCTGGGCGT
ATCAACATAG GTTTGCCTTA CTATACTCGC GGTTGGCAGG GAGTCACAGG CGGTGTTAAT
GGTCTGTGGG GTAAAGCTGC ACTGCCAGAT CAAGCAACTT GCCCAGATGG AACGGGTGAA
GGTGATAACA ACTGTGGCTA TGGTGCACAG GGAATAGACA ACCTTTGGCA TGATCTTGAT
AAAGCGGGTA ATGAGATGTT TGCCGGCTCT AACCCTATGT GGCATGCGAA GAATTTAGAG
CAGGGGATTG CTGGTAGCTA TCTGCCCGTT TATGGACTCG ATCCTGTGAA CGATCCTGCC
GATCAACTGA CGGGAATCTA TGAGCGTCAT TACGATAATG TGGCTCAATC ATCATGGCTT
TGGAACCCTG CCAAAAAGGT CTACTTGTCT ACTGAAGATG AGCAAGCGAT GAACGCTAAG
GTTCAGTATG TCGTAGACAA AGGGATCGGT GGTGTGATGT TCTGGGAACT TGCTGGTGAT
TTTGATTGGT ATCCAGAGCG TAACGGTGGT CAAGGTGAGT ACTTTATCGG TGAGACAATG
ACAACCATTG CCTACGACAA ATTTGCTGCT GCAACGCCAT ATGGCAATAA GGTGAGTAAC
TCTCCAGCCT TGGCTAATAC CATAGCGATG AGTGCGAGCT TATCAGGCTA TAAAGTGGGT
GACAGTAACT ACCCAATTAC GCCAACTTTG ACTATCACCA ACAACAGCCA AAGCACTATC
CCTGGTGGCG CTGTATTTGA GTTTGATATT TCAACCTCTA CCTCGTCTCA AATTAGTGAC
CAATCTGGTA TGAATTTGAC TGTTATATCT GATGGGTCAA ATGTGGGAGC TGGTAACGTA
GGAGGCTTAG AAAATGACTT CCATCGTGTG CAGTTTACTC TGCCAAGTTA CAAATCCATT
GCACCAGGTG CCGACTTTGG TGGCACGATT AAGTATTACC TGCCTGTATC CATGCCGTCG
AACTTCACTG TTACATTTGA TGGGGTGACC TATGACTTTG GTCAAGTTGG TGACACTGTG
CCAGATGAAT GTGAGCTTGA TCCAACAGCG CCTGGTTGTG GAGACACAAC ACCACCAACA
TCAGATCTGT GCAGTGCTGC CAATGTGAAT CCGGCAACTA TTCCTGCATA CCCTAACTTT
CCTCAAACTG ACTGGGCCGG TAACCCAAGT CACGCTATTG GTGGAGATAG GATGAAAGAT
GAAGCTGCAG TATTTGTTGC ACTTTGGTGG ACGAATGCCA AACCGAGTGC TGCAAGTGGT
GATTGGGATT TTGTCTGCAA CATCGATTAA
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| Protein sequence | MSNKTAYLSR RHRLALLIST ALMSQGVINQ AYAVDCQGVA PWSADTVYAT TTQVTQSNGL
YQNKWWTTNE SPSEAGQWGV WETLGQCDGI SNQPPVVNIL SPLADARVLL NDSVILDAEV
TDSDGTLTSQ VWTANGAVVT SPWIAQEQGS VVLTLTATDN DGASTEQSVT VTVINGQNQL
PVTSIISPTN DSVVTYGDDL VISATASDPD VGDSIAKLEL LVDGVVSGTD LTSPYEFNWT
ASSEGGHTLQ TRAFDLQNDS AVSELVNINV SAANQLPSVV LSAPNANFSL PINGELTISA
DAQDVDGEVV SVSFYANGLL IETDTVAPFT ALYTGIEAGD LSITAQATDN LGANTFSSAV
MGYVGDRPTS HEVCRPDGLE GDSVYCDIYD EQGREKMGAD HARRVIGYFT SWRNGTNGQP
SYLVNDIPWD KITHINYAFA HVNSDNKVSV GNPNSVDNPA TGMTWSGVAG AEMDPEYSYQ
GHFNLLNKYK KLHPQVKTLI SIGGWAETGG YFDENGVRVA SGGFYEMTKT QAGINTFADS
VVDFLRTYGF DGADIDYEYA TSMAKSGNPD DFAIADPLRA TLFAQYDLLM KTLREKLDIA
SKQDGKHYML TVAAPASGYL LRGMEAYQMS RFLDYVNIMS YDLHGAWNDF VGHNAALFDT
GEDAELAFWD VYSTAQYGGI GYLNTDWAYH YFRGAMPAGR INIGLPYYTR GWQGVTGGVN
GLWGKAALPD QATCPDGTGE GDNNCGYGAQ GIDNLWHDLD KAGNEMFAGS NPMWHAKNLE
QGIAGSYLPV YGLDPVNDPA DQLTGIYERH YDNVAQSSWL WNPAKKVYLS TEDEQAMNAK
VQYVVDKGIG GVMFWELAGD FDWYPERNGG QGEYFIGETM TTIAYDKFAA ATPYGNKVSN
SPALANTIAM SASLSGYKVG DSNYPITPTL TITNNSQSTI PGGAVFEFDI STSTSSQISD
QSGMNLTVIS DGSNVGAGNV GGLENDFHRV QFTLPSYKSI APGADFGGTI KYYLPVSMPS
NFTVTFDGVT YDFGQVGDTV PDECELDPTA PGCGDTTPPT SDLCSAANVN PATIPAYPNF
PQTDWAGNPS HAIGGDRMKD EAAVFVALWW TNAKPSAASG DWDFVCNID
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