| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2673 |
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| Symbol | |
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| ID | 6116972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3270638 |
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| End bp | 3272587 |
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| Gene Length | 1950 bp |
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| Protein Length | 649 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641634204 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_001761044 |
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| Protein GI | 170727018 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism
[P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
[COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAGAA AAAGAGTGTG GTACAAAGTT CTTGAGAATA AGAATGAGCT TCTAGAAGGC
CGTGTAATGT CAGTCACAGC TGGACATCAA GTCCTCTGTT TAAGCCATTT TGAGGGAAAG
TATTCCGCCT TAGATAACCG TTGTCCCCAT CAAGGTGGCC CACTGGGTGA AGGCTCGATA
GAGAAAGGGT TACTTCGTTG TCCTTGGCAT GGTTGGGAGT TTCACCCCTG CTCTGGTATA
CCGCCAGGCG GTTTTAACGA TGGTATTCAA ACTTTTGAAG TCAAAGTTGA AGGTGACAAC
ATCCTTGTCG CCATCGAAGA GGAGGAGGAA CATCAAGCCA CCATCTCAGA TGTGATGGTG
GAAACCATGG TCAACTGGGG CGTTAACCGA GTATTTGGCA TGGTTGGTCA CTCAAACCTC
GGCATGGCCG ATGCTCTCAG GCGTCAAGAG GAGCAAGGTA ATCTTAAATT TATTGGCATA
CGCCATGAAG GTGCCGCCTC ATTTGCCGCC TCAGCTTATG GTAAGTTAAC TGGAAAACCC
GCCGCCTGTT TCGCCATTGC AGGGCCAGGC TCTACCAATA TGTTTACAGG ACTTTGGGAT
GCTAAAGTTG ACCGAGCGCC CATATTGGCA TTAACAGGCC AAGTGGCGAC TCAAGTGGTC
GGTACGGGTA ACTTTCAAGA GGTTGATCTG ATTAATGCGT TTAACTCTGT GGCCGAGTTC
AACCATAGGG TCGAGCATAA GAGTAAACAC AGTGAACTGA TGAGCTTGGC TATCAAAACC
GCCATCATTA AGCGCGATGT CTCCCACCTC ACCTTCCCTG ATGAAGTACA AGAGTTACCC
CTTGAGAACA ATGAGCGCGC ACAGACCGAT GAGGAGCGGA TCACCTCCTT TACCATAGCG
CCACCTCAAG AGAGCGTTGA TAAAGCGCTC AACATGCTCA ATCAATCGGC CAAACCAGCT
ATTATCGTCG GCCACGGGGC CAGATTTCAC ATGAAGGAGA TCCTCGACTT TGCTGAGAAG
TTGAACTGCC CAGTGATGAC CACTTTTAAA GCCAAAGGTC AGATCTCAGA TAGCCATCCA
TTAGGTTGTG GTGTATTAGG ACGAAGCGGA ACACCTATCG CATCATGGTT TATGAATGAA
GCCGATCTAC TACTGGTTAT TGGTGCCTCG TTTTCAAACC ACAGCGGGAT CACACCTAAA
AAGCCCACTA TACAGATAGA TTTCGATCCT CTTGCGTTAA GCAAGTTCCA CAAAATTGAT
GCTGCTGTCT GGGGTGAGAT ATCGGTTACA GTGAAAATTC TAGCCGCAAA AATGACCAGT
TTCGACAATA AAATTAATCG AATAGAGGAT ATCAAGAAAC GCAGTGATAT TTGGGCGGCA
GAGAAAGCTA AACGCCTCAC CGAAGACCGA GGTAAAGGGA TCAGCTCCAT ATCTGTCTTC
GATGCACTAT CAAAACTCAC ACCAGAGAAT GCCGTTGTGT GTGTCGATGT AGGTAACAAC
GCCTATTCAC TGGGTCGATA TTTTGAAAGT AAGCAACAAA CATTTCTGAT GTCAGGCTAT
CTCGGCTCTA TCGGCTTCGC CTTTCCTGCA GCCATGGGCG CATGGGCAGC GGTTGGTAGT
CAAAGACCCA TTATCGCGGT CGCTGGTGAC GGCGGTTTCT GTCAATATTT AGCAGAGCTA
ACTACAGCGG TAAAATACAA AATGCCTATT AAGGCGATTA TCTTAAACAA CAGTGAACTT
GGCAAAATAT CCAAGGAGCA GAGAGCCGGA GAGTTCGATG TCTGGGCCAC AGATTTAGTT
AATCCTAACT TCTCACAATA CGCTAACTCC TGTGGCGCTC TGGGCATACG TGTCACAGAA
AATGAAGCCC TTGAGGAGGC CATGAAGACT GTGATGTCTC ACGACGGTCC TGCACTGCTT
GAGATAATCA CAGATGTTGG TTTAATCTAA
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| Protein sequence | MTRKRVWYKV LENKNELLEG RVMSVTAGHQ VLCLSHFEGK YSALDNRCPH QGGPLGEGSI
EKGLLRCPWH GWEFHPCSGI PPGGFNDGIQ TFEVKVEGDN ILVAIEEEEE HQATISDVMV
ETMVNWGVNR VFGMVGHSNL GMADALRRQE EQGNLKFIGI RHEGAASFAA SAYGKLTGKP
AACFAIAGPG STNMFTGLWD AKVDRAPILA LTGQVATQVV GTGNFQEVDL INAFNSVAEF
NHRVEHKSKH SELMSLAIKT AIIKRDVSHL TFPDEVQELP LENNERAQTD EERITSFTIA
PPQESVDKAL NMLNQSAKPA IIVGHGARFH MKEILDFAEK LNCPVMTTFK AKGQISDSHP
LGCGVLGRSG TPIASWFMNE ADLLLVIGAS FSNHSGITPK KPTIQIDFDP LALSKFHKID
AAVWGEISVT VKILAAKMTS FDNKINRIED IKKRSDIWAA EKAKRLTEDR GKGISSISVF
DALSKLTPEN AVVCVDVGNN AYSLGRYFES KQQTFLMSGY LGSIGFAFPA AMGAWAAVGS
QRPIIAVAGD GGFCQYLAEL TTAVKYKMPI KAIILNNSEL GKISKEQRAG EFDVWATDLV
NPNFSQYANS CGALGIRVTE NEALEEAMKT VMSHDGPALL EIITDVGLI
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