| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2594 |
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| Symbol | |
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| ID | 6116891 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3172387 |
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| End bp | 3173067 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641634124 |
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| Product | hemolysin III family channel protein |
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| Protein accession | YP_001760966 |
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| Protein GI | 170726940 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
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| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.268239 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCATCAC AGGAAATATG CCATCAAGCC CCTGCTGAGC AAGTGCTTAA TTCAAGTGGC
TATACGCTTC ATGAAGAGCT AGCAAACAGC GTCAGCCATG CCCTAGGGAT TATCGCAGGT
ATCATTGGGC TTATTTTCTC TGTTATCAAA GGACAAGACA CGCTAACTTC TGTGCAGATG
CTAGGTGTTG TGATCTACTG TAGCAGTATT ATTTTACTCT TTTCTTGCTC GACGGCATAC
CACAGCGTCT CAAACCCAAA GTGGAAACAT AGGCTGAAAA TAGCCGATCA TTGCGCTATC
TATTTCCTTA TTGCTGGAAC CTATACACCA TTAATGTTAA TCGCACTTAA AGGTGAGCAA
GCCACTGTTA TTTTAATTGC GATCTGGTCT TTGGCTGTGG CGGGAGTGTT ATTTAAAACC
CTGTTTATTC ATCGTTTTAA AAAATTCAGT GTGATGCTTT ACCTCGCCAT GGGTTGGCTA
TGCGTCACCG TAATGAGTGA TATGATAGCG GCAATGTCGC CATTAGGGTT TCAACTTCTA
TTAGCTGGCG GTCTTTTTTA CAGCCTAGGG GTGGTGTTTT ATGTGGGTAA ACGGATCCCC
TATAATCATG CTATTTGGCA TCTATTTGTA CTCGCGGGCG CCATCAGTCA CTTCCTCTGT
GTCTACCTCA CCTTGCTTTA A
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| Protein sequence | MSSQEICHQA PAEQVLNSSG YTLHEELANS VSHALGIIAG IIGLIFSVIK GQDTLTSVQM
LGVVIYCSSI ILLFSCSTAY HSVSNPKWKH RLKIADHCAI YFLIAGTYTP LMLIALKGEQ
ATVILIAIWS LAVAGVLFKT LFIHRFKKFS VMLYLAMGWL CVTVMSDMIA AMSPLGFQLL
LAGGLFYSLG VVFYVGKRIP YNHAIWHLFV LAGAISHFLC VYLTLL
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