| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2468 |
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| Symbol | |
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| ID | 6116742 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3014936 |
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| End bp | 3016129 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641633975 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001760840 |
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| Protein GI | 170726814 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.17063 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.298309 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCTACAA AAAAACAGAT TATTTTGCCT ATTGCCGTTA TCTCAATAGG GATTGGAAGT
TTCTTAGCAA TTTCAGCATT GAAAAAGCCG CCAGAAGAGA AAGAAGCAGT AGACAACACC
CCACTCGTTG CCGTAAAGCA GGTAAAGCTT GAGCCAATGA CGTTTAAGGT AAACTCATAC
GGCGTTGTAA ATGCAAAGTA TGAAACAGAA TTAGTCTCTC AGGTAAATGG GGAGATTGTC
TTTCTATCTG ATACCTTTGT TCGCGGTGGA TTTGTCAAAA AAGGCGATAT CCTTGCCAGA
ATAGACTCTA GTGATTATGA CGCAGATCTC ATTGATGCTG AAGCAAAACT TGCGTCGGCT
CGCGCCACAT TAGTCCAAGA GAAAGCGTTT GGTAAAGTCG CCGAAGAGGA GTGGAAACGC
ATTAAAGATG GCGTGCCTAC TGAGTTGAGT TTACGTAAAC CACAACTTGC TCAAGAGCTT
GCCAAGCTAA ACTCCTCTGA AGCAGGTCTT AAGCGCGCAA AACGTAATGT AGAGCGAACC
ATCATCAAAG CCCCTTACGA TGCACTCATT GAGAGCCGTA ATATTGGCTT AGGCTCTTAC
GTAAGCATGG GAACAAAACT TGGAAAAGTG TTAAGCACCC ATAAAGCAGA GATCCGTTTA
CCTCTGGCAG ATAAAGAGAT CCAATATCTG GTAAATAAAG GCAAAGATGC CGATGTGACT
TTAGTTGCCA ATCTCGGTGG CAGCAAACAG GAGTGGGCAG GAAAGATAGT TCGAAGCGAA
GGCGTTATAG ACAGTCGCAG TCGTATGACC TACTTAGTTG CCGAAGTCAT TGACCCATAC
GGTTTACAGT CCGATAAGAG TGAGCTCAGA TATGGTACCT ATGTAACAGC TAATATTTCT
GGTACTGATG CTGGTGATGT CGTCGTTATG CCAAGACACT TAGTCATCAA TGGCCAGATA
GCCATACTCG ATGACGATAA AAAGCTTCGC TATAAAGATG TCAACGTGAT CCGTCAATCT
GGCGCAGAGG TCGTGATATC AGATGGCTTG ACTCAAAACA TGGAGGTGAT CATCTCTGCG
TTGGATTATC CTGTCGAAGG GATGAAGCTA GCCTTACCTG AAGATAAGTT ACTACAGCAA
AATAGTGAAG GTGAAGAGTC TGATACTCAA CTTGCCATGG AAGAGAAGGA GTAA
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| Protein sequence | MATKKQIILP IAVISIGIGS FLAISALKKP PEEKEAVDNT PLVAVKQVKL EPMTFKVNSY
GVVNAKYETE LVSQVNGEIV FLSDTFVRGG FVKKGDILAR IDSSDYDADL IDAEAKLASA
RATLVQEKAF GKVAEEEWKR IKDGVPTELS LRKPQLAQEL AKLNSSEAGL KRAKRNVERT
IIKAPYDALI ESRNIGLGSY VSMGTKLGKV LSTHKAEIRL PLADKEIQYL VNKGKDADVT
LVANLGGSKQ EWAGKIVRSE GVIDSRSRMT YLVAEVIDPY GLQSDKSELR YGTYVTANIS
GTDAGDVVVM PRHLVINGQI AILDDDKKLR YKDVNVIRQS GAEVVISDGL TQNMEVIISA
LDYPVEGMKL ALPEDKLLQQ NSEGEESDTQ LAMEEKE
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