| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2406 |
|---|
| Symbol | |
|---|
| ID | 6116680 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2950693 |
|---|
| End bp | 2951736 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641633914 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001760779 |
|---|
| Protein GI | 170726753 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0625] Glutathione S-transferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.309302 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000427749 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGAATTTCA AGGGGGTTGA TTATGTTAAC AAAGAAATCA ATCTCTTCGA ATTTCTAGCA
ACTATTCCTA AAAATACCGG TAGAAAGGCG ATGCCCGCAC TCAAGTGCAA AGATGGCGGA
TGGTTGTGTG ATACGCCGTT AATCATGGAA GAATTGGAAA AACGCCATCC ACAGCCAAGC
ATTGAGATTC ATACATCCAT TCAAAGGTTT GTAGCCGAAT TATTCCAGAA CTGGATGGAT
GATGTAGGCA TTCCAATCGC CTTACATTCC CGTTGGTCCT ATCCAGAGAA TTATGAAAAG
CTAAATCGCG AAGAAGCTGG TAAGAATCTA CTTCCCTTCA TGCCAAAATT TATTCGTAAT
AAAGTAGCGG ATAAAGCATT ATCTGATGCC ATGTCAGAAA AGCTACCGAA TATGGGTGTA
ACGCCAGATC AAATACCCTT ACTTGAAAAA TGGGCGACTC ATATTCTGGG TTTATTAGAC
GTTCACTTGT CTCAGTACGA CTATTTATTA GGTGGTCGTC CCACTGTTGC TGACTATGCA
TTACTCGGAC TAATGCAAGG CCATCTCAAT CGTGATCCGT GGCCTAAACG TGAGTGGATT
GATCTACGTC CACATTTGCA AAAGTGGGTG GAAAAAACCC ATAGTGGTGC CCCAGCAAAA
GGGGATCTGT TGGCTGATGA TCAGATTCCT GACACGCTTA TGCCGATCGT TAGAATCATC
TTTGATGAAT ATATGCCATT AATGGACCTA ACGGTAAAAC AAATCAGATT GTTGATTAAT
GAAGAGGGAT TACTACCCGG GGATGAACTA CCTAGATCAA CGGAACGGTT CCTGTTTAAA
ATGGGAGATG GGCAGTTTAA ACGCGCATCA TTTACCTACT CGGTATGGCG TATGCAGAGG
CTACAAAAAA TCGTATCCGC ATTTTCTAAA GAAGAACAAA ATCGTTTAGC TGCCTGGCTT
TTAGAACAAG GCCAATACAA CTTTTTGGAT TTGGACTTTG GTCCAAACTT AAAACCACAG
GGACTAACAG CAGCATTGGC TTGA
|
|---|
| Protein sequence | MNFKGVDYVN KEINLFEFLA TIPKNTGRKA MPALKCKDGG WLCDTPLIME ELEKRHPQPS
IEIHTSIQRF VAELFQNWMD DVGIPIALHS RWSYPENYEK LNREEAGKNL LPFMPKFIRN
KVADKALSDA MSEKLPNMGV TPDQIPLLEK WATHILGLLD VHLSQYDYLL GGRPTVADYA
LLGLMQGHLN RDPWPKREWI DLRPHLQKWV EKTHSGAPAK GDLLADDQIP DTLMPIVRII
FDEYMPLMDL TVKQIRLLIN EEGLLPGDEL PRSTERFLFK MGDGQFKRAS FTYSVWRMQR
LQKIVSAFSK EEQNRLAAWL LEQGQYNFLD LDFGPNLKPQ GLTAALA
|
|---|
| |