Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2188 |
Symbol | |
ID | 6116458 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 2681939 |
End bp | 2683069 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641633696 |
Product | succinyl-diaminopimelate desuccinylase |
Protein accession | YP_001760565 |
Protein GI | 170726539 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0116098 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCAAG AAGTCTTAAC CTTAGCTCAG GATCTTATCT CTCGCCCCTC TGTCACTCCT CTTGATGAAG GGTGTCAGAC ACTCATGGCT GAAAGGTTAG CAGCCCAAGG CTTTGAGATA GAATCTATGG TATTTGAAGA TACCACCAAT ATGTGGGCAC GCCGAGGCAA AGAGGGACCA CTTTTTTGTT TTGCAGGGCA CACAGATGTC GTTCCAGTCG GAGACCTTAA TCGTTGGCAC ACGCCCCCCT TTGACCCGGT AGTCATCGAT GGTTACCTTC ATGGTCGCGG CGCAGCTGAC ATGAAAGGTT CACTTGCCGC CATGGTGGTT GCCACTGAGC GCTTTGTAGA GAAACACCCC GATCATAATG GTTCTATCGC TTTTCTCATC ACCAGTGATG AAGAGGGTCC ATTCATTAAC GGGACAACCC GTGTTATCGA TACCTTAGAA GCACGCAATG AGAAAATAAC TTGGTCTCTT GTCGGTGAAC CATCTTCGAC CCATAAGTTG GGTGATATCG TTAAAAATGG TCGACGAGGC AGCTTAACTG GAAATCTAAC CATCAATGGT ATTCAAGGAC ATGTTGCCTA CCCTCACCTT GCGGATAATC CAATCCACAA AGCGGCGCCC GCTTTGGATG AACTGGCACG GATGAAATGG GATAATGGTA ATGAGTTTTT CCCACCGACC AGTTTTCAAA TTGCCAATAT AAATGGCGGT ACCGGTGCAT CGAATGTGAT CCCTGGTGCC CTTGAGGTGA TGTTTAATTT TCGTTACTCC ACTGAGGTAA CCGCAGAGAT CTTAATCCAG CGAGTGCTTA ATATCTTAGA TGCGCACGGA TTAGATTACG ATATCAGCTG GATTTTTAAC GGCCTGCCAT TTTTAACTGG TGACGGCCCA CTACTGGATG CAACCCGCGA AGCGATTAAA CAGGTTACAG GCTCCGATAC AGATCCCCAG ACCTCAGGTG GCACATCTGA TGGACGCTTT ATTGCGCCAA CTGGTGCCCA TGTGATTGAG CTAGGTCCAG TCAACGCGAC CATACATAAG GTCAACGAAT GCGTTAAGGT TTCAGATCTT GAACTGCTAA CCCAATGTTA TGAAGTGATC CTGGAAAAGC TACTTTGCTA A
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Protein sequence | MSQEVLTLAQ DLISRPSVTP LDEGCQTLMA ERLAAQGFEI ESMVFEDTTN MWARRGKEGP LFCFAGHTDV VPVGDLNRWH TPPFDPVVID GYLHGRGAAD MKGSLAAMVV ATERFVEKHP DHNGSIAFLI TSDEEGPFIN GTTRVIDTLE ARNEKITWSL VGEPSSTHKL GDIVKNGRRG SLTGNLTING IQGHVAYPHL ADNPIHKAAP ALDELARMKW DNGNEFFPPT SFQIANINGG TGASNVIPGA LEVMFNFRYS TEVTAEILIQ RVLNILDAHG LDYDISWIFN GLPFLTGDGP LLDATREAIK QVTGSDTDPQ TSGGTSDGRF IAPTGAHVIE LGPVNATIHK VNECVKVSDL ELLTQCYEVI LEKLLC
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