Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2126 |
Symbol | |
ID | 6116389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 2602385 |
End bp | 2603410 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641633629 |
Product | diguanylate cyclase |
Protein accession | YP_001760505 |
Protein GI | 170726479 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.128443 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0489303 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCAAAG AACTTATGCA AGTCGCTGCA CTCAATTTAA AAAAAGCGGT CCCTTTGATG CTCAAACATC AAATTCCCAC AACACCGACT AACTATGCGC TCTGGTACGC CTATGTAGGT GAACAGCAAC CTCAGCTTAA TGAACAACTC GATACGATTA TTAATGAGCA CAGCACCTGC CCTCCCTCAA ACTCAACACT GCTCTATCGT GAATTTGTTG CCGATCCGGT TGAACTAGAT GTCATTGATA TGAGACAAAA CCTTGAAGCG ATGGCCACCG AGCTTTCTCA GTCTCTAAAA GATACCAACA CAGACGCCAC ACACTTCCAA AAACGGATTG ACAGTAACTT TGATAAACTC AACCGCATTG AGGAGGAGGG AGTCAGTCTT GAGAAAGTAT TGGGTGTGGT GCGAAACCTA GTGAAGGAAT CCGATGAAAT ACGTTCGAGC ACTGAGTACT TTACTGGTCA TCTTAAACGG GCCCAACAAG AGATTGATGC ATTAAAGGCG CAATTAAAGA AATCAGAAAA AGATGTCCTA TTCGATGCTT TAACTGGCGT GTTGAACCGA AGAGCTTTTG ATTCAGATCT AAAGGGTTCC CTAAGCCAAT CGCCAGATGG ACTCTGTTTG ATTCTTATCG ATATCGACCA TTTCAAAGCA TTCAACGACA ACTATGGCCA CCAGTTAGGG GATCAAGTAC TAAAAGCCGT TGCTAAACGT CTGGGGGAAT CTTGTAGAGA GGGAACCAAG CTGTACCGCT ACGGAGGAGA AGAGTTTGCC GTTATCACAG CCAATAGCCA GTTAAGAAAA GCCAGGCACT TGGCAGAAGC GATGCGCAGA GCCCTTGAGA AGGTCTCACT AAAAGACAGA CGAAAAGATG CCATGATCAA CAATATCACG GCCTCTTTTG GTGTTGCACA ATGGGATCCT TCGCTCTCTG CCACCCAGCT AATAGAGCAA TCGGATAAAC TACTCTACGA AGCTAAGCGG TTGGGCAGAA ACCGAGTAAT GCCTATTGCC AGCTAA
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Protein sequence | MSKELMQVAA LNLKKAVPLM LKHQIPTTPT NYALWYAYVG EQQPQLNEQL DTIINEHSTC PPSNSTLLYR EFVADPVELD VIDMRQNLEA MATELSQSLK DTNTDATHFQ KRIDSNFDKL NRIEEEGVSL EKVLGVVRNL VKESDEIRSS TEYFTGHLKR AQQEIDALKA QLKKSEKDVL FDALTGVLNR RAFDSDLKGS LSQSPDGLCL ILIDIDHFKA FNDNYGHQLG DQVLKAVAKR LGESCREGTK LYRYGGEEFA VITANSQLRK ARHLAEAMRR ALEKVSLKDR RKDAMINNIT ASFGVAQWDP SLSATQLIEQ SDKLLYEAKR LGRNRVMPIA S
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