| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2024 |
|---|
| Symbol | |
|---|
| ID | 6116287 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2486697 |
|---|
| End bp | 2487452 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 641633527 |
|---|
| Product | DNA alkylation repair enzyme |
|---|
| Protein accession | YP_001760403 |
|---|
| Protein GI | 170726377 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4912] Predicted DNA alkylation repair enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATAT GCATGGATAG TTACAGAGAT TTTCATCAGT ATTTAAAACA GGAGTTGCAA
GCCGTCAGTT CGGAAGAGAA AGCGGCTTCT ATGCGCCGCT ATTTCCCCAA TGGATTAGTG
TGTATAGGGG CTATTTCTGA AGATATTAAC CAGATATCTG CTGAGTTTAT TAGGGAGCAT
GATGCCATGC TACCAGAAGG GTACTTATCC CTTGCTGAGT ATATTTTGGA AAGGGCAGAG
TTTCATGAAG AGATCCTTAT TTCATATAGG CTTATAGAGA AACTAGTTAA AAGGCATTTT
GATGATAACT TGTTAGTTCG CTTTCAATAT TGGTTAGAAA ACTATGCAAA TAATTGGGCG
TTAGTAGACG ATTTATGTAT TAAAGCCATT TATAACTATC TCTATGCTAG ACCCCATTTG
ATTGAGAAAA CTCAACTCTG GGCGAGATCA GAGGTTTCGT GGTGTCGGCG TGCGAGTAAC
GTGGTTTGGG TTAAATTTAT TTATCGAAAA ATGGGGAAAC AAGTGTACAG GCTTAACCCT
GAACTTGTAT TTTCAAATTG CGATCTTCAT ATCCATGACC CTGATGAATT TGTTCAAAAA
AGTGTAGGGT GGCTGTTAAA AGTGACTACA CCACATCATC ATGATGCTGT TGTAAATTAT
ATAAAAACGA ATATTGCTAG CATGCAAAAG TCAACAGTTA GATATGCGTT AGAGAAAGTT
CCTAAAGAGA CTAGAGACGA GATAATGAGG CTGTAA
|
|---|
| Protein sequence | MDICMDSYRD FHQYLKQELQ AVSSEEKAAS MRRYFPNGLV CIGAISEDIN QISAEFIREH
DAMLPEGYLS LAEYILERAE FHEEILISYR LIEKLVKRHF DDNLLVRFQY WLENYANNWA
LVDDLCIKAI YNYLYARPHL IEKTQLWARS EVSWCRRASN VVWVKFIYRK MGKQVYRLNP
ELVFSNCDLH IHDPDEFVQK SVGWLLKVTT PHHHDAVVNY IKTNIASMQK STVRYALEKV
PKETRDEIMR L
|
|---|
| |