| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1864 |
|---|
| Symbol | |
|---|
| ID | 6116127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 2304788 |
|---|
| End bp | 2305501 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641633367 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001760243 |
|---|
| Protein GI | 170726217 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000294024 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAT TAGCAATTAT CACTGGAGGT AGCCGCGGGA TCGGCTATTC CATCGCTGAA
AAGTTTGCTC AGATGGGGTT TAGCCTGATC TTAATGGCAA AAACAGCCAG TAATTTAGCC
TCGGCTAAGC AGGGACTACT AAAAATAAAT GCAAACATCA GCATAGAAAC CATTGCTGTC
GATTTTAGTG ATAGCGCGGC AGTAGAGAGT GTCGCTCAGA CGATAACCAA GAAGCATTCG
AACATTGATA TACTGGTTAA TAGCGCAGGC GTCCTTAGTA TTGAGTTCGA ACACGCTTCA
GCTGCCACAC TTAGCACACT GTTTTCCGTC AACTGCATCT CTACAATGGT ACTCACAAAT
GCCATTAGCG AGCAGATGAA ACAAGCGCGC TCCGGCTATA TTATCAATAT TGCCTCTTTA
GCTGGCAAAA GCCACTTACC TAAAATTGGT GCATACGCAG CGACCAAAGC CGCCCTTATC
AGTTACAGTG AAAGTTTGTA TAAACACCTG CTTCCCCACA ATGTTAAGGT CTCCTGTCTC
TGCCCCAGTG TGGTTAATAC TGAGATGACT GATGATGGGC GAATTGCAAA CCAAGATAAG
ATACAGACTG ATGATTTAGT TAACGCCGTT GCTTATATCC TCTCGTTAGG CAAAGGCGCT
CAGCTTCCCC AACTCGATAT TGATTGTACC CCCATCGCCT TAGCTAAGCT GTGA
|
|---|
| Protein sequence | MSKLAIITGG SRGIGYSIAE KFAQMGFSLI LMAKTASNLA SAKQGLLKIN ANISIETIAV
DFSDSAAVES VAQTITKKHS NIDILVNSAG VLSIEFEHAS AATLSTLFSV NCISTMVLTN
AISEQMKQAR SGYIINIASL AGKSHLPKIG AYAATKAALI SYSESLYKHL LPHNVKVSCL
CPSVVNTEMT DDGRIANQDK IQTDDLVNAV AYILSLGKGA QLPQLDIDCT PIALAKL
|
|---|
| |