Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1618 |
Symbol | fliF |
ID | 6115859 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 2009326 |
End bp | 2011032 |
Gene Length | 1707 bp |
Protein Length | 568 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641633101 |
Product | flagellar MS-ring protein |
Protein accession | YP_001759999 |
Protein GI | 170725973 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTGTAG GTACAAATTC CACATTGGCA AGTGATGATA TTGCCGGTGG TGTTCAGGAA GAGAATAAGT CTGGTGGACT TGGCTCATTT GGTGGTGTTG ATATGTTACG CCAAGTGACA ATGGTGCTTG CACTTGCTAT CTGTCTTGCT GTGGCTGTTT TTGTCATGTT GTGGGCCCAA GAGCCAGAGT TTCGACCATT GGGTAAAATG GCGACCGAAG ATATGATCCA AGTACTCGAT GTGTTGGATA AGAACAAGGT TGCTTATAAA ATAGAGGGCG ATGTTGTTAA AGTGCCTGAG GAGAAGTATC AAGAGGTCAA ATTGATGCTT AGCCGTGAAG GGGTGGATAG CGCGTCAAAC AGCACTGACT ACCTGAGCCA AGATAGTGGC TTTGGTGTAA GTCAACGAAT GGAACAAGCA AGGCTTAAAC ACAGCCAAGA GCTAAATTTA GCTAGAGCGA TTGAAGAGCT ACGAAGTGTC ACTCGTGCAA AAGTGATTTT GGCTATTCCA AAAGAGAATG TGTTTGCCAG AAATCGCTCA AAACCTAGTG CCACTGTAGT GATTAGTGCA CGCCGTGCAG GTTTAGGTCA GGAGGAGGTC GATTCGATAG TCGATATCGT TGCTTCTGCT GTACAGGGGT TAGAGCCAAC ACGTGTTACG GTTACCGATT CTAATGGTCG TTTGCTAAAC TCAGGCAGTC AAGATGGTGT ATCGGCTCGA GCTAGAAGAG AGCTTGAGTT GGTTCAACAG AAAGAGTCAG AATACCGCAA TAAAGTTGAA TCCATATTAA TGCCGATCCT TGGCCCTGAA AACTTTACCT CTCAAGTTGA TGTGAGCATG GATTTTACCG CTGTTGAGCA AACCGCAAAA CGCTTTAATC CAGATTTACC AGCGCTTCGC AGTGAGATGA CGGTAGAGAA TAGTTCTAAC TCAGGTGCGA TAGGCGGCAT ACCTGGTGCT TTGAGTAATC AGCCTCCAAT GGAAGCGAAC ATTCCTCAAA ATGCATTAGA CGGTGAACAG AGTGAAGCAA ATAAGAACCC TGGATCCTCT CATAAAGAAG CAACTCGTAA TTTTGAATTA GACACCACCA TCAGCCATAC CAGACAACAG ATAGGTGTTG TTAGACGTGT GAGCGTCTCT GTGGCTGTCG ATTTTAAGCC TGGTCCCGCT GGTGAAGATG GACAGGTCAA TCGAGTACCA AGAACAGATC AAGAGATGGC TAATATTCGT CGTCTACTTG AAGGGGCTGT TGGTTTTAGT ACCCAGCGTG GGGATGTTAT TGAGGTGGTA ACTGTTCCCT TTATGGATCA ATTGATCGAT GAAGCTCCAG CACCTGAATT ATGGGAGCAA CCTTGGTTCT GGCGTGCCAT TAAACTTGCC ATGGGTGGCT TAGTTATTCT GGCGCTGATC CTGTTTATCG TCCGACCTAT GTTGAAGAAA CTTATCTATC CAGATAGCAG TAACCTACCT GATGAGCCAA AATTTGGTGA TGAGTTAGCA GAAATTGAAG ATCAATATGC ATCGGATACT TTGGGCATGT TAAATCGTCC TGATGCTGAG TACAGCTATA ATGATGATGG CTCCATTTTG ATACCAGATC TGCATAAAGA TGATGATATG ATTAAGGCGA TTAGGGCACT CGTGGCTAAT GAGCCGGAAC TGTCTACACA GGTCGTTAAG GGTTGGTTAC AAGACAATGA GCAATAA
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Protein sequence | MVVGTNSTLA SDDIAGGVQE ENKSGGLGSF GGVDMLRQVT MVLALAICLA VAVFVMLWAQ EPEFRPLGKM ATEDMIQVLD VLDKNKVAYK IEGDVVKVPE EKYQEVKLML SREGVDSASN STDYLSQDSG FGVSQRMEQA RLKHSQELNL ARAIEELRSV TRAKVILAIP KENVFARNRS KPSATVVISA RRAGLGQEEV DSIVDIVASA VQGLEPTRVT VTDSNGRLLN SGSQDGVSAR ARRELELVQQ KESEYRNKVE SILMPILGPE NFTSQVDVSM DFTAVEQTAK RFNPDLPALR SEMTVENSSN SGAIGGIPGA LSNQPPMEAN IPQNALDGEQ SEANKNPGSS HKEATRNFEL DTTISHTRQQ IGVVRRVSVS VAVDFKPGPA GEDGQVNRVP RTDQEMANIR RLLEGAVGFS TQRGDVIEVV TVPFMDQLID EAPAPELWEQ PWFWRAIKLA MGGLVILALI LFIVRPMLKK LIYPDSSNLP DEPKFGDELA EIEDQYASDT LGMLNRPDAE YSYNDDGSIL IPDLHKDDDM IKAIRALVAN EPELSTQVVK GWLQDNEQ
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