| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1570 |
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| Symbol | |
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| ID | 6115810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 1960918 |
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| End bp | 1962045 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641633052 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001759951 |
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| Protein GI | 170725925 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.628485 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATTA TAACCGATAT ACTCCAGAAC AAAATCATAA TGGCTATGCT ACTTATCGGC
CTTCTGAGCG CTTGTCAGGG AGAAGTGACC ACTCACAGTA CACAAGCTCA ATTACAAACT
GTGACAACAC AGAGCCTAAC GTTATCGAAC TCCTATCAAC ATACACAGGA GTTTACAGGC
ACAATTAGAG CGGGAAACAC AACAGGAATA GGCTTTGAGC TGTCAGGAAA ACTAAAATCA
CTCGCCGTAG ACAGTGGCGA CAGCGTCGAG AAAGGTCAAC TATTGGCACA GCTAGATACA
CGTTTACTGG AAGCTGAAAG AGCAGAGATT GATGCCAGCT TGTCACAAAA TAGCGCTGAT
CTCACCCTTG CCAGAAATAC CTTAAACCGC AGCCTTGAGC TACAAAAACA GGGTTACACG
TCAGAGCAGC AGCTTGATGA ACTAAAAGGT CAGTTAAACA GCCTATTAGC AGCCCAAAAG
AGACTCACCG CTTCAAAGCT TGCCAATGCA TTACGAATAG AAAAATCATC ACTGCTTGCG
CCTTTTAGTG GCGTAATAAG CAAACGAAAC AGTAATCTGG GCGAAGTAGT AGCATTAGGA
ACGCCCATAT TTACGCTTGT TCAAAACAGA AACCCTCAAG CCTTTGTGGG CGTCCCCGTC
AAACTTGCTC AGCAACTCAA CACCAAACAA GGCGTATTAC TCAAGGTTGG CAACAACAGT
TACACAGCAC AAATTGAGGG AAAAGGCGCT GAAGTTAATC CGGTTACACG TACCGTACCG
TTAAGGTTAT CCCTGCCTAT TGATGCTCAG GTGATCAATG GTGAAATCGC CTATTTAATC
TATGAGACAG ATATCCAACA AAACGGTTAC TGGGTGCCTA TCTCGGCGCT AACCGATGGA
ATAAGAGGCT TGTGGAACCT CTATGTTATC ACCCCTAATA ACGATTTAGA GGCCGATAAA
GGCACCTTTA ATATCGAACG ACGGGATATT GAGATCCTCT ATACCAAGGA AGATATGGCT
TACATTCAAG GCGCTCTCAA AGTTAATGAA GATTATATCA CCCAAGGACT GCATAAACTC
GTTGTTGGTC AGCAGGTCAA GCGCAACACT AACGTAGCGG CGAGGTGA
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| Protein sequence | MNIITDILQN KIIMAMLLIG LLSACQGEVT THSTQAQLQT VTTQSLTLSN SYQHTQEFTG
TIRAGNTTGI GFELSGKLKS LAVDSGDSVE KGQLLAQLDT RLLEAERAEI DASLSQNSAD
LTLARNTLNR SLELQKQGYT SEQQLDELKG QLNSLLAAQK RLTASKLANA LRIEKSSLLA
PFSGVISKRN SNLGEVVALG TPIFTLVQNR NPQAFVGVPV KLAQQLNTKQ GVLLKVGNNS
YTAQIEGKGA EVNPVTRTVP LRLSLPIDAQ VINGEIAYLI YETDIQQNGY WVPISALTDG
IRGLWNLYVI TPNNDLEADK GTFNIERRDI EILYTKEDMA YIQGALKVNE DYITQGLHKL
VVGQQVKRNT NVAAR
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