| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1526 |
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| Symbol | |
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| ID | 6115766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1900209 |
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| End bp | 1902077 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 641633010 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001759909 |
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| Protein GI | 170725883 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.480144 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0382354 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAGA AAAATGGGGA GGGTTCTCTT GTATTTTTGG TTGCCAAAAC CATTCTTTTA
TGCAATTTGA TTTTTTCTCA CAAGCTGCTG AGAAGCTTTA GAAGTAAACA TGTTGGATTA
AATAAATCAA TTTTTTTATT TCTATATGTA ATTAATTTTT CTGGAGGAGT TGTGGCGGAA
TCATTTGATG AAGCATCATT GAATGATAAG CTTGTTACAC TTGAATTAAA GCGGACGCAA
TCTCCTCAAT TTGTATCTGA TTCATTAAAA GATATAAAAA AGTTAATTAA CAAAATGAGC
TTAGAGCAGC GATATCGTTA CGTTCTTCTT CAAGCGCATT CGTACGGCAT TGCTGGTAAA
CCTAATGATG CATTCCAACT CTTAAATCAA CAGCTGAAAA ATGAATTCCC CATTCATCTT
AAACATTATA AAGCTCGTAC TTTATCTTTA CTCGCAAACA GTTACTCGCA CTACAATTAT
TTTTCTGATG CGTTAAAAAC TCTTCATCAA CTGCTTCCTT TATTAAGTGA AGTAAATGAT
ATTGAAAGTG AAGTTATTGG CTATCGTTTG GCAATAGAGC TATTTGGTGA ATTAAGAATG
AGAAATGAAG CTTTGTCATA TGCGAATGTT CTTTATAGTA AATTCGATGA AATTGTATCT
CCACGACATA AATGCTTTGT GGCATTTAAT TATGCGGAGA GCTTTTTGGG AGTTTATGGT
TCTTCACCCA GTTTGTGGTC CAAAGTCGAG AGTTTATATG CGAATGCATA TGAATTATGT
AACACTGCCA ATGAGAAAAT GATAATGGCA GTGTCGGCTT TAGGGCAGTC AAATATGCTA
ATCAAAAGAA GAGCTTTTTT AGAAGCAAGA GAGTTGGCTA AGCATGGATT AGATTTGTCG
ATATCAATAC CTTATCCACA CGATATTGCA GAAGGGTATC TGACGCTAGC TCGAATTGAT
ATTTCAGAAA GCTTGTATCA GGCTGGGCTC GTAGAACTTA AAAAAGCTTT AGATATCTCT
TTAACACTTG GTGATAGTAA ATTGCTTTCT AAAGTGTATA AGCCACTTGC TAAATTGAGC
GAAGAACTTG GTGAGAGTGA GAAAGCATTA GAGTACCTAA AGCTTTACCA GCAGCATCAT
GAGAAAATAT TAGGCGAAAT TCAAAGTAAA ATCATTGCTT TCGAGACGAC AAAGCTTGAT
TACCTAGAGA AGGAACGACA GATCCGTTAC CTTAATAAAG ACCGTGAGCT TTATACCGCA
AAAGCTGAAC TAACCGAATC TCAGCGCAAT AATGAACGAA TGATGTTTCT GCTTATCTGT
GGCAGCTTAG TGGTATTGAC CCTGTTCGCT ATTAATATGA CCCTACAGAA GCGTAAATAT
ATGAGGTTAG CCCAATTTGA TGCGTTAACT GGCATATTTA ATCGAGGGAC TGGACAGAAT
TTAGCTGAAA ACAGATATAT TAAAGACTCT ATGTCGGGGA TAGATTTTAG TGTGGTCTTG
TTTGATCTGG ATCGCTTTAA GAGTGTAAAT GATAACTACG GTCATGCAAT GGGAGACTGG
GTACTTAAGA AAGTCTGCGA AGTGGTCAGC AAAGAGTGCC GCAGTAGTGA TATATTTACC
CGTTTTGGTG GTGAAGAGTT TGTTCTCTTT ATGCCGAACA CCAGTGAAAG TGTGGCAAGA
GAGGTCGCGG TAAAGTGTAA AGCTCGGATT TTGGCGATTG ATACTCGATA TTCGGGTCAT
GAGTTTACCA TTAGTGCCAG TTTCGGCGTT GCAACCAGTA CAGAGAAAGA TTTAAGTCTC
GACCCTATAT TGCAACGTGC TGATATCGCA ATGTATCAAT CTAAAGAGCA AGGCAGAGAG
CGGGATTAA
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| Protein sequence | MNKKNGEGSL VFLVAKTILL CNLIFSHKLL RSFRSKHVGL NKSIFLFLYV INFSGGVVAE
SFDEASLNDK LVTLELKRTQ SPQFVSDSLK DIKKLINKMS LEQRYRYVLL QAHSYGIAGK
PNDAFQLLNQ QLKNEFPIHL KHYKARTLSL LANSYSHYNY FSDALKTLHQ LLPLLSEVND
IESEVIGYRL AIELFGELRM RNEALSYANV LYSKFDEIVS PRHKCFVAFN YAESFLGVYG
SSPSLWSKVE SLYANAYELC NTANEKMIMA VSALGQSNML IKRRAFLEAR ELAKHGLDLS
ISIPYPHDIA EGYLTLARID ISESLYQAGL VELKKALDIS LTLGDSKLLS KVYKPLAKLS
EELGESEKAL EYLKLYQQHH EKILGEIQSK IIAFETTKLD YLEKERQIRY LNKDRELYTA
KAELTESQRN NERMMFLLIC GSLVVLTLFA INMTLQKRKY MRLAQFDALT GIFNRGTGQN
LAENRYIKDS MSGIDFSVVL FDLDRFKSVN DNYGHAMGDW VLKKVCEVVS KECRSSDIFT
RFGGEEFVLF MPNTSESVAR EVAVKCKARI LAIDTRYSGH EFTISASFGV ATSTEKDLSL
DPILQRADIA MYQSKEQGRE RD
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