| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1457 |
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| Symbol | |
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| ID | 6115696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1836811 |
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| End bp | 1841082 |
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| Gene Length | 4272 bp |
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| Protein Length | 1423 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641632941 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001759840 |
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| Protein GI | 170725814 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGAATG TTCGCAATAT ATATATAATA AAAAAAGTTA TGGTTATTGC CTTGTTAGTG
CTTATCTCGT TACCAGTACT ATCTGAGAAT GATGGGGACG ATGAAGAGCT TAACAACAAT
GAATTTTTGA ATGACTCTTT TATCAAAAAA TTGACCCCGA ATTATGGACT CAGTTTTCAC
TCCAGTGATT TGATGGGGGA GAAATATGAT ATTGCTAATG GTCTGTTAAC GTTTCACCGA
ACTGATGCAA ATATTCCCGG GAACTCAGGC TTACAAGTCG CGTACAACAC TTCATTTACG
GTTGATAGGC CAGAAATTAC AGGCTGGAAA GAGGAGCTTC CTCGAATTGA ATTTCAAATG
GTAAGAAGTT ACGGGCAAGC TGAAGATTTT TATTTTGCTG AAGCATGGAA GTCGAACAGT
AACAATCGTT GTTCTGGCTT ACAACATTTA CGGGGGATTA CTGCTTCTTA TGATGATGAA
AATGGTAACA GTACTAATGT TCGTCTTCGT GGTGATAGGT ATTCTTCTGG ATTAAGACTT
ATCATTCCCA ATAAGGTCTC TAGTATCTTG ATGTATCCTA GCCCAAATCA ATTGGAAGAT
TTACCACAAG GTACACGCTA TTCAACGAAT AATGATTGGG TTATATCTTG CTTTACAACA
GGTGGAAATG AAGGCTTTTT AGCGACAAGT CCAGAAGGGG TCAAGTACTA TTTAGATGAG
TATAAGTTTT ATAAATATGA ACTGAATAGT AATACATCTG AGATTTCATT ACCGAGTCGT
GGTGGCTCCA GTTCATATCG TAAAGTAAAA CATGCCTTAT ATGCTTCTAA GGTAGAGGAC
AGGTTTGGTA ATGTTGTTGA ATATCAATAT AATGATAAAA AAGAGCTCAT AAAAATTGTA
TCTAATGATG GAAGGGAAGT TACTGTTGAA CGACCATCAA ACTCAGTTAA ATTAATTAAA
TCATCAGGCA AAGTGTGGAA ATATGTGTCT GGAGGCTCTT ACACTACAAA TACCTCTCTT
TTAGAGGTGA CTATGCCTGA TGGGAGAAAG TGGAATTACG ATCTTCATTA TGTTGACGAG
CCGGATGATC AAGAAGATTC TTGTAGCTCT TCTATAAGCC CTACTTTGGA GGAGATGAAT
GTCACTCACC CTGATGGCTC GTCTGCTATT TTCTACTTTG GTGCTAGGGA GTTCTTTAGG
GCTAATGTTA AGTGGTGGTT TCTAAAAAGC CTTTATGATT ACAATGATCT TCCTGACCAC
ACCTGTACTA ACAATTATGC GTTAGTAAAG AAAAAGTTGA ATGTTTTAAG TGAGGAATAT
GTATGGCGGT ATTCATACTC TGAAAATTCT GGTCACTATA GAGGGAAAAC TAGAGAGCGA
TTCCAAGATT TAGAGGGCGA TATTCCAAAT AATATAGACA GGCTCTTACA TAGAACGACC
ACAGTTACAA ACCCCGACCT ATCAAAAATA GTTTATTACG TAAATAGGGA TTCTTGGTCA
TGGAAAGAGG GGAAAATTGA AGCAGTAGAA AAACTTGATG GAAATAATAC TTTAGTAGAG
CAAGTTCAAT ATGAATTTGA TGCTCCAGAG TACAATGGAT ACCCCGTGAA TAGTGATTTT
TATAATAATT ATTCAAAGCG GGCAAATGGG ATCAAAACTA AAACGACCTC TATTTATGAT
GACGATGTAT TCGTAAGTGA TGTAGTTGAG TTTAATAAAT TTGGTCGTCC TTTGATAACT
TCAGAGTCCT CAACGGTATT TTCTGAGAAA AAATACAGGA AAGTAGAGTA CCAACACGAT
AAAAATAACT GGGTACTCAA TTTACCCACT AAACAATATG TATCAAGCAC CTCTAGTTTT
GGAGAGCCCT ATAAAGAAAC AACATACAAT AATAGCTTGT TACCCTATCA GAAAAAGTTA
TTTGGTCGTT TAGTTTCAAC CAATACCTAT CACGCTGACG GTAATCTTAA GAAAACAACT
TTTAGTGGCT TAAACCGTTA TGAGCAGTTT GATGATTACT ATCGCGGTAA AGCCCGTAAA
ATCACTATGC CTTGCGCAAC CACAAATGGT TGTAATACAG CAAATGGCAG CACCACTAAT
ACAGTCATTG CTAAGCTAGA AGTTAATAGT GATGGCACCA CAAAAAGTGT GACTGATTTT
AATGGCCATA AAACCAGTTA TAGCTATAAC CCAATTGGTT GGTTAACTAA GATTGATTAT
GTCAATGGTG ACTGGTCTGA CAAAATCATC AAATACGCTC AGGTGACCAC TGCAAATGAT
GGTATCACCG GTAGCGGTAT CGCAGTTGGC CAACTTAAAC AAACCATTAC TCAAGGCAAT
TTTGAGCAGA AAATCTATCA TGATGGTCTG TTACGCCCAA CCTTCACGCG AACAAGAGAT
AAAGCCAACA GTGACACTAT CAGTTACCAA CGTACTGAGT ATGACCATGA AAACCGCCCA
ACACTGCAAT CCTTCCCAAG TAGTAATGCA AGTGCGACAA CTGGCACGGT AACAACATAT
GATGCTCTAG GTCGTGTAAT TGGGACCTTG CGTCAAAGCG ATAATGCCGC TAGTAGTATC
GAATACTTAA GTGGTAACAA ACAAAGAGTC ACCGATGCTA AAGGCAATGT GACTACAACA
ACCTATCTGG CGTATGGTAG CCCCAGTTAT GACAAGCCAA CGTTTATAGA TGCCCCAGAC
AGTGAGGATA CCAGCATTGC CTACAACAAA TTCGGTCAGA TTAAAACAAT TACCCAAGGA
GAGGTGACCG AAAAGCGCTT ATATGATGGT TATCAACAAC TGTGTAAAAC CTATCGTCCT
GAAACGGGAG TAACTGCTTA TGGTTACAAC ACACAGCGCC AGCCTATTTG GCGTGCTGAG
GGGACTGATG GAGGTCATGT TAGCTGCACG CCATCATCGG TGCCTGCATC ACATAAAGTG
ATTATTGGTT ATGACAATCT AGGACAATTA AGAACTGAAA ACTTCCCCGA CACCACACCT
GATAATACCT ATGGTTATGA TGCGAATGGT AATCTTGCAA GTCTGACCTC AGGCAGTGGT
AGCAGCGCCA TTAGTTGGAG CTACCTGTAC AACTCACTTA ACCTGATAGA TAAAGAAACC
CTATCCATCG ACGGCAAAAG TTTTGTGTTG GATTGGGAGT ATAACAGCTT AGGAAACGTA
GACTCCTTAA CGTATCCTTC AGGAAGGCCT ATTAGTTTTG CCCCGAATGC TTTAGGGCAG
CCAACCAAGG CGAGTGAAGG GGTTATCAAT TACGCCAGTG ATATAGAATA CCATCCCAAC
GGCCAGTTAA AACAGCTGAC CTATGGTAAT GGGATGGTGC GTAATGTGGC TTTAGATACC
ACAGGGCGTA TCGATGCCAT CACTGATGCT AAGGGAAGCG CTTATCAACT GAACTTAGAT
CCAAGTTATG ACTTAAACGA TAACATTCAT AGTGTTATCG ACTGGGTTGA CCGCAGCAAT
GATATCGACA ACATGAGTTA TGACGGCCTA GACCGTTTAA AGTCTGCTGA TGGTAAGTGG
GGCACTGGCA ATTACACTTA TGATGGATTA GGTAATATCA AAACCCGCAG TATCAGTGGT
TCATCGATTA CTTACCACTA CAATACGCTC AATCGCCTCG ACAAACTTAG TGGAGCTTAT
GCCTACAACT ATGCATACGA TACCCGCGGT AACGTGACTC ACAATGGTCG CTATGGCTTA
GGTTTTAACC GTGCGAATCA AGTCACCACA GCCAAAGGTA TCCCTTACCG TTACGATGGC
CACAATCGCC GAGTATCAAA AAAAGCTGAT GAATACAGTA TTTATAGTCA AGCAGGTCAG
CTACTTTATC GACAAAAAGA CAATGGTGAT AAAACCGATA CTCTCTACTT AGGTAAGCAG
TTAATTGCAG AGGTTGAGCA TAGAGGCACT TATACTCCCC CAGCACCCAA ACCGAGCATT
AGTCTTATCT TTTCTGGCGG GGGAAGCAGT GGTGGGGATT GCCCTAAAGG GTTTGTGTGT
GAATCGGCAA GTGCCATACC GACTCTTCCC CCAGCTGATG CGTACACATT GTCATGGACA
ACAAGCAATG CCGATAGCTG TACTGGTAAG GTCTTTAGAA ATGGCTCTTT ACACTCAACA
CTTTCAGGCA TCAGCAATAC GGGGATTTAC TTCGAAAATG AAGGTGCGGG CTATGGAGCG
GAGCTAACCT GTAGTAGCAG TGGTGGCACT ACGACTAAAT TTGCGTATGC AGGCAATGGA
GATGAATACT AA
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| Protein sequence | MWNVRNIYII KKVMVIALLV LISLPVLSEN DGDDEELNNN EFLNDSFIKK LTPNYGLSFH
SSDLMGEKYD IANGLLTFHR TDANIPGNSG LQVAYNTSFT VDRPEITGWK EELPRIEFQM
VRSYGQAEDF YFAEAWKSNS NNRCSGLQHL RGITASYDDE NGNSTNVRLR GDRYSSGLRL
IIPNKVSSIL MYPSPNQLED LPQGTRYSTN NDWVISCFTT GGNEGFLATS PEGVKYYLDE
YKFYKYELNS NTSEISLPSR GGSSSYRKVK HALYASKVED RFGNVVEYQY NDKKELIKIV
SNDGREVTVE RPSNSVKLIK SSGKVWKYVS GGSYTTNTSL LEVTMPDGRK WNYDLHYVDE
PDDQEDSCSS SISPTLEEMN VTHPDGSSAI FYFGAREFFR ANVKWWFLKS LYDYNDLPDH
TCTNNYALVK KKLNVLSEEY VWRYSYSENS GHYRGKTRER FQDLEGDIPN NIDRLLHRTT
TVTNPDLSKI VYYVNRDSWS WKEGKIEAVE KLDGNNTLVE QVQYEFDAPE YNGYPVNSDF
YNNYSKRANG IKTKTTSIYD DDVFVSDVVE FNKFGRPLIT SESSTVFSEK KYRKVEYQHD
KNNWVLNLPT KQYVSSTSSF GEPYKETTYN NSLLPYQKKL FGRLVSTNTY HADGNLKKTT
FSGLNRYEQF DDYYRGKARK ITMPCATTNG CNTANGSTTN TVIAKLEVNS DGTTKSVTDF
NGHKTSYSYN PIGWLTKIDY VNGDWSDKII KYAQVTTAND GITGSGIAVG QLKQTITQGN
FEQKIYHDGL LRPTFTRTRD KANSDTISYQ RTEYDHENRP TLQSFPSSNA SATTGTVTTY
DALGRVIGTL RQSDNAASSI EYLSGNKQRV TDAKGNVTTT TYLAYGSPSY DKPTFIDAPD
SEDTSIAYNK FGQIKTITQG EVTEKRLYDG YQQLCKTYRP ETGVTAYGYN TQRQPIWRAE
GTDGGHVSCT PSSVPASHKV IIGYDNLGQL RTENFPDTTP DNTYGYDANG NLASLTSGSG
SSAISWSYLY NSLNLIDKET LSIDGKSFVL DWEYNSLGNV DSLTYPSGRP ISFAPNALGQ
PTKASEGVIN YASDIEYHPN GQLKQLTYGN GMVRNVALDT TGRIDAITDA KGSAYQLNLD
PSYDLNDNIH SVIDWVDRSN DIDNMSYDGL DRLKSADGKW GTGNYTYDGL GNIKTRSISG
SSITYHYNTL NRLDKLSGAY AYNYAYDTRG NVTHNGRYGL GFNRANQVTT AKGIPYRYDG
HNRRVSKKAD EYSIYSQAGQ LLYRQKDNGD KTDTLYLGKQ LIAEVEHRGT YTPPAPKPSI
SLIFSGGGSS GGDCPKGFVC ESASAIPTLP PADAYTLSWT TSNADSCTGK VFRNGSLHST
LSGISNTGIY FENEGAGYGA ELTCSSSGGT TTKFAYAGNG DEY
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